View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1498_low_96 (Length: 379)
Name: NF1498_low_96
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_96 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 12 - 364
Target Start/End: Original strand, 14222310 - 14222662
Alignment:
| Q |
12 |
tgagaagaagaaaaatatcaaggtttctgatgcagaaaggatagctgatgcattgagtagaattgcatccgtgtgtgagtcgcgcacagctgctatgaag |
111 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14222310 |
tgagaagaaaaaaaatatcaaggtttctgatgcagaaaggatagctgatgcattgagtagaattgcatccgtgtgtgagtcgcgcacagctgctatgaag |
14222409 |
T |
|
| Q |
112 |
gcactgatagtacctgggacatctattcctgaagtgatcgctgagcttaattgcatagaggtcattggaatcgatcttgattggcattcccgatgttgtc |
211 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
14222410 |
gcactgatagtacctgcgacatctattcctgaagtgatcgctgagcttaattgcatagaggtcattgggatcgatcttgattggcattcccgatgttgtc |
14222509 |
T |
|
| Q |
212 |
aactgatgttgtttaagcctgcgagggaaatgtttgtagcattacaaggactgggaaatgagcaaagcttgttgaattggcttaaatatgcagcatatac |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14222510 |
aactgatgttgtttaagcctgcgagggaaatgtttgtagcattacaaggactgggaaatgagcaaagcttgttgaattggcttaaatatgcagcatatac |
14222609 |
T |
|
| Q |
312 |
acctctgccatttatgaaagaagtagattggtcaatgttttaaattagatttt |
364 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14222610 |
acctctgccatttatgaaagaagtagattggtcaatgttttaaattagatttt |
14222662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University