View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_97 (Length: 378)
Name: NF1498_low_97
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_97 |
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| [»] scaffold0436 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 20 - 369
Target Start/End: Original strand, 26166154 - 26166502
Alignment:
| Q |
20 |
cacaaatacgatcttaaatgagagtcataacattatatagacgaaggaaatatactaatgttggtttggttctaaagaatcaactcacaaataagaacaa |
119 |
Q |
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| T |
26166154 |
cacaaatatgatcttaaatgagagtcataacattatatagacgaaggaaatatactaatgttggtt-gattctaaagaatcaactcacaaataagaacaa |
26166252 |
T |
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| Q |
120 |
aaatggaataaattaaagcaaataatggtagcagaattttatggctcatttgccatgtcaaaattttatgactacaaataacttacatggttttgacaaa |
219 |
Q |
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| T |
26166253 |
aaatggaacaaattaaagcaaataatggtagcagaattttatggctcattttccatgtcaaaattttatgactacaaataacttacatggttttgataaa |
26166352 |
T |
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| Q |
220 |
attaacaccggcgcgtcgtcaacttctttttaaactgttgaaaattttcttcgcatttcctatcccacacatatgttgtcctttccgagtcaatcgtgtc |
319 |
Q |
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| T |
26166353 |
attaacaccggcgcgtcgtcaacttctttttaagctcttgaaaattttcttcgcatttcctatcccacacatatgttgtcctttccgagtcaatcgtgtc |
26166452 |
T |
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| Q |
320 |
acaagtaacactatctacaaagattctttgatgaacctcctatgctactc |
369 |
Q |
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| T |
26166453 |
acaagtaacgctatctgcaaagattctttgatgaacctcctatgatactc |
26166502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 320
Target Start/End: Original strand, 19869477 - 19869533
Alignment:
| Q |
265 |
tttcttcgcatttcctatcccacacatatg-ttgtcctttccgagtcaatcgtgtca |
320 |
Q |
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| T |
19869477 |
tttcttcgcattgcctattccacacatatgcttgttctttccgagtcaattgtgtca |
19869533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 305
Target Start/End: Original strand, 23453075 - 23453191
Alignment:
| Q |
190 |
actacaaataacttacatggttttgacaaaattaacaccggcg-cgtcgtcaacttctttttaaactgttgaaaattttcttcgcatttcctatcccaca |
288 |
Q |
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| T |
23453075 |
actacaaacaacctaattggctttggcaaaattaacaccggcatcgtcgtcaacttctttttaagctcttg-aatttttctttgatttgccaatcccaga |
23453173 |
T |
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| Q |
289 |
catatgt-tgtcctttcc |
305 |
Q |
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| T |
23453174 |
catatgtatgtcctttcc |
23453191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0436 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0436
Description:
Target: scaffold0436; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 211 - 295
Target Start/End: Complemental strand, 12428 - 12344
Alignment:
| Q |
211 |
tttgacaaaattaacaccggcg-cgtcgtcaacttctttttaaactgttgaaaattttcttcgcatttcctatcccacacatatgt |
295 |
Q |
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| T |
12428 |
tttggcaaaattaacaccggcatcgttgtcaacttctttttaagctcttg-aatttttctttgcattgcctatcctacacatatgt |
12344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 320
Target Start/End: Complemental strand, 18548613 - 18548557
Alignment:
| Q |
265 |
tttcttcgcatttcctatcccacacatatg-ttgtcctttccgagtcaatcgtgtca |
320 |
Q |
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| T |
18548613 |
tttctttgcattgcctattccacacatatgcttgttctttccgagtcaattgtgtca |
18548557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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