View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1498_low_99 (Length: 377)
Name: NF1498_low_99
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_99 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 181; Significance: 1e-97; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 116 - 367
Target Start/End: Original strand, 30583391 - 30583645
Alignment:
| Q |
116 |
taagtttcggatatccagtagtgtgnnnnnnngaaacaaatgttaggaattatttgataaaaaatgttagagttcgtgttagaatttttgccaagtaata |
215 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30583391 |
taagtttcggatatccagaagtgtgtttttttgaaacaaatgttaggaattatttgataaaaaatgttagagttcgtgttagaatttttgccaagtaata |
30583490 |
T |
|
| Q |
216 |
aattttgcttatttgttcaatcttggatcactttatttcatcttaatacaattaaattttatcaaaatttgggtgctctcttggc---nnnnnnnnngtt |
312 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
30583491 |
aattttgcttatttgttcaatcttcgatcactttatttcatcttaatacaattaaattttatcaaaatttgggtgctctcttggcttttttttttttgtt |
30583590 |
T |
|
| Q |
313 |
acatcttgctctcttaccattattattttcttgtttgttttgttgcagtcctatg |
367 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30583591 |
acatcttgctctcttgccattattattttcttgtttgttttgttgcagtcctatg |
30583645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 30582567 - 30582668
Alignment:
| Q |
18 |
tgtttcatggcctaattgcaactctcgaccgagacagttcaacagttacacactcgtgacannnnnnnaattcattcgtctttatagattgtagaagtta |
117 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||| |||||||| |
|
|
| T |
30582567 |
tgtttcatggttcaattgcaactctcgaccgagacagttcaacagttacacattcgtgacatttttttaatgcattcgtctttatagattgcagaagtta |
30582666 |
T |
|
| Q |
118 |
ag |
119 |
Q |
| |
|
|| |
|
|
| T |
30582667 |
ag |
30582668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 28680926 - 28680978
Alignment:
| Q |
17 |
atgtttcatggcctaattgcaactctcgaccgagacagttcaacagttacaca |
69 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
28680926 |
atgtttcatggcctaattgcaactcttgaccaagacagttcaacagttacaca |
28680978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University