View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14990_high_2 (Length: 430)
Name: NF14990_high_2
Description: NF14990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14990_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 16 - 414
Target Start/End: Original strand, 45746365 - 45746763
Alignment:
| Q |
16 |
cttcaaacaatatttggccaggaattgctggtccaccacagttgttacatattggattcaccattgcttctttcatcatgctattctcccctcttagctt |
115 |
Q |
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| T |
45746365 |
cttcaaacaatatttggccaggaattgctggtccaccacagttgttacatattggattcaccattgcttctttcatcatgctattctcccctcttagctt |
45746464 |
T |
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| Q |
116 |
gtcattttcctgcctaagcattatgttctcatgcctttccagttgagtctgattcaacaaaaacaaagtcagttaattgttacaaattacagtatctata |
215 |
Q |
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| T |
45746465 |
gtcattttcctgcctaagcattatgttctcatgcctttccagttgagtctgattcaacaaaaacaaagtcagttaattgttacaaattacagtatctata |
45746564 |
T |
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| Q |
216 |
ttaatacaaatgcaataactgttgtgtttaacaagtttttaaatcaaatttgtaatctttgatattatggagaatcacaaacaaaagcagcttaggcaac |
315 |
Q |
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| T |
45746565 |
ttaatacaaatgcaataactgttgtgtttaacaagtttttaaatcacatttgtaatctttgatattatggagaatcacaaacaaaagcggcttaggcaac |
45746664 |
T |
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| Q |
316 |
cttgttgtggagacattaaaaaccttaatgccacaactcagatcgcgagtgcagatttttaaaagaaaatggaacatgatatttaacattcaccttcat |
414 |
Q |
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| T |
45746665 |
cttgttgtggagacattaaaaaccttaatgccgcaactcagatcgcgactgcagatttttaaaagaaaatggaacatgatatttaacattcaccttcat |
45746763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 165
Target Start/End: Original strand, 12326862 - 12326930
Alignment:
| Q |
97 |
tattctcccctcttagcttgtcattttcctgcctaagcattatgttctcatgcctttccagttgagtct |
165 |
Q |
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| T |
12326862 |
tattctcagctctaagcttatcattctcttgcctaagcaaattgttctcatgcctttccaattgagtct |
12326930 |
T |
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