View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14990_high_3 (Length: 322)
Name: NF14990_high_3
Description: NF14990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14990_high_3 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 30737914 - 30737593
Alignment:
| Q |
1 |
gattgaagttaattgaagaagtggattttcaaagatcattttatccaggttattataacaagagaggatcaggctcgaaatgtaaccagagtttccatat |
100 |
Q |
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| T |
30737914 |
gattgaagttaattgaagaagtggattttcaaagatcattttatccaggttattataacaagagaggatcaggctcgaaatgtaaccagagtttccatat |
30737815 |
T |
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| Q |
101 |
tggaaggagtagtacctacaaattttgtagggttttttattttgaaaaggaaatttttcctttgtattgagtacgtagtaatctcaacaagtttgtgcat |
200 |
Q |
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| T |
30737814 |
tggaaggagtagtacctacaaattttgtagggttttttattttgaagaggaaatttttcctttgtattgagtacgtagtaatctcaacaagtttctgcat |
30737715 |
T |
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| Q |
201 |
ttatcaagaaggtatttcttgatgcaaatttgacacacttaaatagagtctttctctatgctgaagtggaggaatctgatatctgagtgaaggatcttca |
300 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| || |||||||| ||||||||||||||||| |
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| T |
30737714 |
ttatcaagaaggtatttcttgatgtaaatttgacacacttaaatagaggctttctctatgctgaagtggacgagtctgatatatgagtgaaggatcttca |
30737615 |
T |
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| Q |
301 |
cagacatgacttattatgcttg |
322 |
Q |
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|||||||||||||||||||||| |
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| T |
30737614 |
cagacatgacttattatgcttg |
30737593 |
T |
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