View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14990_low_1 (Length: 451)
Name: NF14990_low_1
Description: NF14990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14990_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 77 - 436
Target Start/End: Original strand, 38112897 - 38113240
Alignment:
| Q |
77 |
gaggaagaaaaactataagccgtaaactcgaacgtaacttatagcagtttatcaaaaatatgatgtaagctagtnnnnnnngctataaatatgtgaggaa |
176 |
Q |
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| T |
38112897 |
gaggaagaaaaactataaaccgtaaactcgaacgtaacttatagcagcttatcaaaaatatgatgtaagctagtaaaaaaagctataaatatgtgaggaa |
38112996 |
T |
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| Q |
177 |
aatttgttgccaaactagtctatttttgtcatataaacttatcagttacgtgtcataagttcagaaatttgtcttgtcaaacaaagctaataatcaatga |
276 |
Q |
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| T |
38112997 |
aattt--------------------ttgtcatataaacttatcggttatgtgttataagttcaaaaatttgtcttgtcaaacaaagctaataatcaatga |
38113076 |
T |
|
| Q |
277 |
caannnnnnnatgaagaaaaatttagagaggttgatatctcattcattccactacatgaaaactttagagttcatcaaacatgagattta----aattaa |
372 |
Q |
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||| |||||| ||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||| |
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| T |
38113077 |
caatttttttatgaaggaaaatttagagaggttgatgtctcattcattccactacaggaaaacttgagagttcatcaaacatgagatttaaattaattaa |
38113176 |
T |
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| Q |
373 |
cctaactccaagaagactatatatgacaaacaaaattgtatattgattaattatttgtcatatt |
436 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38113177 |
cctaactccaagaagactatatatgacaaacaaaattgtatattgattaattatttgtcatatt |
38113240 |
T |
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