View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14990_low_2 (Length: 433)
Name: NF14990_low_2
Description: NF14990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14990_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 22 - 419
Target Start/End: Original strand, 30737226 - 30737616
Alignment:
| Q |
22 |
gcgttccccacaacggcaagtgcatccattcagtccaaggaatggcatcaagtagaaacaatggctaagaaatctgagtcatgtaatcgatcctctgatg |
121 |
Q |
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| T |
30737226 |
gcgttccccacaacggcaggtgcatcaattcagtccaaggaatggcatcaagtagaaacaatggctaagaaatctgagtcatgtaatcgatcctctgatg |
30737325 |
T |
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| Q |
122 |
gaacaattgttcctctaattcaataatgaagggaagatcaaggttcctctaccccatcattggtttaattcagtaaaaaccaagtcgagcatttgtagaa |
221 |
Q |
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| T |
30737326 |
gaacaattgttcctctaattcaataatgaagggaagatcaaggttcctctaccccatcattggtttaattcaggaaaaaccaagtcgagcatttgtagaa |
30737425 |
T |
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| Q |
222 |
aaatgcctggtctcgaatgttttaaatacatccgagccaacttacatctctcgatgtaaacactatgcaatgaattcatcattgaagcaaggacacaaaa |
321 |
Q |
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| T |
30737426 |
aaatgcctggtctcgaatgttttaaatacatccgagccaacttac--------atgtaaacactatggaatgaattcatccttgaagcaaggacacgaaa |
30737517 |
T |
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| Q |
322 |
tctattggaagcctccaatacaaaagaagcatcatagatgttttatatacat-catgttaaattatgccttgacccaagcataataagtcatgtctgtg |
419 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||| |
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| T |
30737518 |
tctattggaagcctccaatacaaaagaagtatcatagatgttttatatacatccatgttaacttatgccttgactcaagcataataagtcatgtctgtg |
30737616 |
T |
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