View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14990_low_6 (Length: 239)
Name: NF14990_low_6
Description: NF14990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14990_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 8 - 221
Target Start/End: Original strand, 26508509 - 26508722
Alignment:
| Q |
8 |
agaagcataggacaacaaactcatgtcctctaacaaaacagtaggcaaaataacaagagcagtaaccatagtaaacattgttgtgccaccaattgttaat |
107 |
Q |
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| T |
26508509 |
agaaacataagacaacaaactcatgtcctctaacaaaacagtaggcaaaataacaagagcagtaaccatagtaaacattgttgtgccaccaattgttaat |
26508608 |
T |
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| Q |
108 |
cctgctaggtgaatttgcacgttcggtacaagtttgttaaggttgtctccttctaaaataagaaaacctgttacagcaagatagagctcagaattcatga |
207 |
Q |
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| T |
26508609 |
cctgctaggtgaatttgcacgttcggtacaagtttgttaaggttgtctccttctaaaataagaaaacctgttacagcaagatagagctcagaattcatga |
26508708 |
T |
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| Q |
208 |
tgattgataccatt |
221 |
Q |
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|||||||||||||| |
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| T |
26508709 |
tgattgataccatt |
26508722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 13 - 214
Target Start/End: Original strand, 26481421 - 26481622
Alignment:
| Q |
13 |
cataggacaacaaactcatgtcctctaacaaaacagtaggcaaaataacaagagcagtaaccatagtaaacattgttgtgccaccaattgttaatcctgc |
112 |
Q |
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|||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||| ||| |
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| T |
26481421 |
cataagacaacaaactcaaatcctctaacaaaacagtaggcaaaataacaagaccagcgaccatagtaaacattgttgttccaccaattgttatatttgc |
26481520 |
T |
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| Q |
113 |
taggtgaatttgcacgttcggtacaagtttgttaaggttgtctccttctaaaataagaaaacctgttacagcaagatagagctcagaattcatgatgatt |
212 |
Q |
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| T |
26481521 |
tatgtggatttctgaatttggtactagtttgtttagattgtctccttctaaaataagaaaacctgttacagctagataaagttcaacattcatgatgatt |
26481620 |
T |
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| Q |
213 |
ga |
214 |
Q |
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|| |
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| T |
26481621 |
ga |
26481622 |
T |
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