View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14991_high_2 (Length: 430)
Name: NF14991_high_2
Description: NF14991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14991_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 20 - 417
Target Start/End: Original strand, 28784476 - 28784873
Alignment:
| Q |
20 |
tccagagtctaaaagagcatataaaattggttacttgctaagtaagtaataaaccaaaaatgggggttttgtcaagtcaaatttgtgacactctaaacaa |
119 |
Q |
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| T |
28784476 |
tccagagtctaaaagagcatataaaattggttacttgctaagtaagtaataaaccaaaaatgggggttttgtcaagtcaaatttgtgacactctaaacaa |
28784575 |
T |
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| Q |
120 |
tggaaagcaagagtcgcacaaggtagctcaaaattgtggcattacattacggtcacactatcgtgcagtgggtctagcaatggaatcatcaatagctagg |
219 |
Q |
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| T |
28784576 |
tggaaagcaagagtcgcacaaggtagctcaaaattgtggcattacattacggtcacactatcgtgcagtgggtctagcaatggaatcatcaatagctagg |
28784675 |
T |
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| Q |
220 |
taattctcggtcgcagcaagatccatagaacccatgttgatggaagagtgtactgaatttcttgtcatcatctcatctgaaatgctactttccctctctc |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28784676 |
taattctcggtcgcagcaagatccatagaacccatgttgatggaagagtgtactgaatttcttgtcatcatctcatctgaaatgctactttccctctctc |
28784775 |
T |
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| Q |
320 |
tttcaataccaatcgcgtcttgaatttccttcactacttctgatattgatggccgcatgtgtgcgtgtgctgcaacgcacatcaacgctttctctgct |
417 |
Q |
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| T |
28784776 |
tttcaataccaattgcgtcttgaatttccttcactacttctgatattgatggccgcatgtgtgcgtgtgctgcaacgcacatcaacgctttctctgct |
28784873 |
T |
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