View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14991_high_8 (Length: 241)
Name: NF14991_high_8
Description: NF14991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14991_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 2557428 - 2557511
Alignment:
| Q |
1 |
catttccatttaataaaagactcaaatttttcggtaagaagcacgattgaaatgtgtactcatacttgccataaaagatgttgt |
84 |
Q |
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| T |
2557428 |
catttccctttaataaaagactcaaatttttaagtaagaagcacgattgaaatgtgtactcatacctgccataaaagttgttgt |
2557511 |
T |
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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 2557518 - 2557564
Alignment:
| Q |
181 |
aaatttgctaaaatatgttggatcatgtgtgtaagtagggagttatt |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2557518 |
aaatttgctaaaatatgttggatcatgtgtgtaagtagggcgttatt |
2557564 |
T |
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