View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14991_low_1 (Length: 472)
Name: NF14991_low_1
Description: NF14991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14991_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 17 - 458
Target Start/End: Complemental strand, 15097146 - 15096702
Alignment:
| Q |
17 |
acctttgagagtgtttttaaggtcacaaaaagtgacaaaacccatgatgtattgctcccttatagcagttctttttcatgtgcctttgaattacttcttg |
116 |
Q |
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| T |
15097146 |
acctttgagagtgtttttaaggtcacaaaaagtgacaaaacctatgatgtattgctcccttatagcagttctttttcatgtgcctttgaattatttcttg |
15097047 |
T |
|
| Q |
117 |
gttatggtgatgcaatttggagtaccgggcgtggcgatggcgtccgtgttaacgaatatgaacatggttgtattgatggcggggtatgtcggcttgttta |
216 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||| |
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| T |
15097046 |
gttatggtgatgcaatttggtgtaccgggcgtggcgatggcgtccgtgttaacgaatatgaacatggtcgtgttgatggcggggtatgtcgggttgttta |
15096947 |
T |
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| Q |
217 |
ggaagaaggagatgatgttaaagtggcccggctg---cggcggtggcggagggatgatggttgtgagtgaaggtttgggggagttgatgaaattggctgt |
313 |
Q |
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|||||||||||||||||||||| ||||| || || |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
15096946 |
ggaagaaggagatgatgttaaaatggccgggttgtggcggcggtggcggagggatgatggtggttagtgaaggtttgggggagttgatgaaattggctgt |
15096847 |
T |
|
| Q |
314 |
acctagttgtcttatgatatgtttggaatggtggtggtatgagattgttactgttttggctggttatttggagaatcctacattggctgttgctgctact |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15096846 |
acctagttgtcttatgatatgtttggaatggtggtggtatgagattgttactgttttggctggttatttggagaatcctacattggctgttgctgctact |
15096747 |
T |
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| Q |
414 |
gggattttgattcagacaactagtatgatgtatactgtccctatg |
458 |
Q |
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| T |
15096746 |
gggattttgattcagacaactagtatgatgtatactgtccctatg |
15096702 |
T |
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