View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14991_low_3 (Length: 332)
Name: NF14991_low_3
Description: NF14991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14991_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 13 - 329
Target Start/End: Complemental strand, 41753273 - 41752973
Alignment:
| Q |
13 |
attatacttttccttaggatattattaaacaaaaagaaaatataaaaccatattgtaaaatttctcaaacatt-aatcnnnnnnnngaaggattctcaaa |
111 |
Q |
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| T |
41753273 |
attatacttttccttaggatattattaaacaaaaagaaaatataaaaccatattgtaaaatttctcaaacatttaatcttttttttgaaggattctcaaa |
41753174 |
T |
|
| Q |
112 |
catttaatcttaaagattctatctctagtcattcatccaaagaaaagaatagcatatannnnnnnctataaaaagtaggaaattgaaagaaacgtgaatc |
211 |
Q |
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| T |
41753173 |
catttaatcttaaagattctacctctagtcattcatccaaagaaaagaatagcatatatttttttctataaaaagtaggaaattgaaagaaacgtgaatc |
41753074 |
T |
|
| Q |
212 |
gctttattgcagtcataaattctatccttttttactttatttcctttttcaataatagtcgaatattttatgaaaaattccagcagagaagtttctaata |
311 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41753073 |
gctttattgcagtcataaattcta-----------------tcctttttcaataatagtcgaatattttatgaaaaattccagcagagaagtttctaata |
41752991 |
T |
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| Q |
312 |
ttccacctgtaaaataaa |
329 |
Q |
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|||||||||||||||||| |
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| T |
41752990 |
ttccacctgtaaaataaa |
41752973 |
T |
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