View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14991_low_5 (Length: 303)
Name: NF14991_low_5
Description: NF14991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14991_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 277
Target Start/End: Complemental strand, 176728 - 176469
Alignment:
| Q |
18 |
ctttccctcttcaaaaatccctctc---------ttctcctcgttattccaacgcttcttatgttcgtacatgtttttgtccaaccctaaccctaacacg |
108 |
Q |
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| T |
176728 |
ctttccctcttcaaaaatccctctcttcttcttcttctcctcgttattccaacgcttcttatgttcgtacatgtttttgtccaaccctaaccctaacacg |
176629 |
T |
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| Q |
109 |
tcacactacaacaactagtactagtactagtaataacaccaaaaaccttccatggctacttcttaaacattctcaacattcaaatgctacttcacaatct |
208 |
Q |
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| T |
176628 |
tcacactacaaca------actagtactagtaataacaccaaaaaccttccatggctacttcttaaacattctcaacattcaaatgctacttcacaatct |
176535 |
T |
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| Q |
209 |
tcttttcataataaccctgaacaacaacagagtactccaacaacagaggatgattcctcttcctcttct |
277 |
Q |
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| T |
176534 |
tcttttcataataaccctg---aacaacagagtactccaacaacagaggatgattcctcttcctcttct |
176469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 41 - 295
Target Start/End: Complemental strand, 176696 - 176442
Alignment:
| Q |
41 |
tcttctcctcgttattccaacgcttcttatgttcgtacatgtttttgtccaaccctaaccctaacacgtcacactacaacaactagtactagtactagta |
140 |
Q |
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| T |
176696 |
tcttctcctcgttattccaacgcttcttatgttcgtacatgtttttgtccaaccctaaccctaacacgtcacactacaacaactagtactagta------ |
176603 |
T |
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| Q |
141 |
ataacaccaaaaaccttccatggctacttcttaaacattctcaacattcaaatgctacttcacaatcttcttttcataataaccctgaacaacaacagag |
240 |
Q |
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| T |
176602 |
ataacaccaaaaaccttccatggctacttcttaaacattctcaacattcaaatgctacttcacaatcttcttttcataataaccctgaacaaca---gag |
176506 |
T |
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| Q |
241 |
tactccaacaacagaggatgattcctcttcctcttct---------acaaacacaacttcatct |
295 |
Q |
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| T |
176505 |
tactccaacaacagaggatgattcctcttcctcttcttcctcttctacaaacacaacttcatct |
176442 |
T |
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