View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14991_low_7 (Length: 251)

Name: NF14991_low_7
Description: NF14991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14991_low_7
NF14991_low_7
[»] chr6 (6 HSPs)
chr6 (1-244)||(2557184-2557442)
chr6 (38-98)||(2615116-2615176)
chr6 (40-121)||(30323089-30323170)
chr6 (11-99)||(2616973-2617061)
chr6 (9-99)||(17515399-17515489)
chr6 (65-122)||(4844441-4844498)
[»] chr4 (15 HSPs)
chr4 (9-122)||(26740739-26740852)
chr4 (29-122)||(42674019-42674112)
chr4 (9-122)||(31216952-31217065)
chr4 (9-122)||(49250087-49250200)
chr4 (38-122)||(55322989-55323073)
chr4 (41-99)||(9319892-9319950)
chr4 (38-99)||(41236087-41236148)
chr4 (38-122)||(31204357-31204441)
chr4 (11-122)||(50328420-50328531)
chr4 (9-119)||(53133448-53133558)
chr4 (38-122)||(37056185-37056270)
chr4 (10-99)||(38354254-38354343)
chr4 (54-99)||(47388488-47388533)
chr4 (51-99)||(17340339-17340387)
chr4 (50-122)||(45219989-45220061)
[»] chr5 (13 HSPs)
chr5 (11-122)||(40298303-40298414)
chr5 (4-122)||(19961516-19961634)
chr5 (41-96)||(730796-730851)
chr5 (9-120)||(3938374-3938485)
chr5 (11-122)||(30685546-30685657)
chr5 (9-122)||(14575972-14576085)
chr5 (42-122)||(30721399-30721479)
chr5 (38-122)||(33208416-33208500)
chr5 (40-118)||(4746048-4746126)
chr5 (9-80)||(14622539-14622610)
chr5 (41-99)||(3257486-3257544)
chr5 (38-99)||(36527423-36527484)
chr5 (31-99)||(25983052-25983120)
[»] chr8 (6 HSPs)
chr8 (15-122)||(40740670-40740777)
chr8 (9-122)||(4993279-4993390)
chr8 (38-98)||(4989291-4989351)
chr8 (38-102)||(39108605-39108669)
chr8 (11-122)||(5957045-5957156)
chr8 (38-122)||(32062275-32062359)
[»] chr1 (10 HSPs)
chr1 (17-120)||(10881878-10881981)
chr1 (9-122)||(15279050-15279163)
chr1 (38-122)||(51295764-51295848)
chr1 (38-120)||(33828121-33828203)
chr1 (38-120)||(33839762-33839844)
chr1 (10-99)||(42549258-42549347)
chr1 (11-122)||(34710960-34711071)
chr1 (49-102)||(51050117-51050170)
chr1 (41-140)||(29587151-29587251)
chr1 (65-97)||(52124804-52124836)
[»] scaffold0004 (1 HSPs)
scaffold0004 (38-122)||(122488-122572)
[»] chr3 (11 HSPs)
chr3 (40-122)||(37700278-37700360)
chr3 (6-99)||(24657295-24657388)
chr3 (37-102)||(12931530-12931594)
chr3 (11-139)||(20378993-20379122)
chr3 (11-99)||(49447627-49447715)
chr3 (43-122)||(28392186-28392265)
chr3 (40-97)||(49230069-49230124)
chr3 (9-66)||(43176964-43177021)
chr3 (9-122)||(53287384-53287497)
chr3 (41-93)||(28554166-28554218)
chr3 (9-93)||(39990772-39990856)
[»] chr7 (10 HSPs)
chr7 (38-99)||(23358453-23358514)
chr7 (38-102)||(43251940-43252004)
chr7 (38-99)||(39983062-39983123)
chr7 (38-97)||(37828346-37828405)
chr7 (41-99)||(23363754-23363812)
chr7 (38-93)||(3398914-3398969)
chr7 (21-99)||(3767200-3767279)
chr7 (11-122)||(25971417-25971528)
chr7 (29-120)||(48633969-48634060)
chr7 (56-122)||(25594582-25594648)
[»] chr2 (5 HSPs)
chr2 (9-122)||(44966070-44966183)
chr2 (11-122)||(31663445-31663555)
chr2 (10-90)||(34242357-34242437)
chr2 (38-122)||(40711219-40711303)
chr2 (11-100)||(14839593-14839682)
[»] scaffold0047 (1 HSPs)
scaffold0047 (6-122)||(66112-66228)


Alignment Details
Target: chr6 (Bit Score: 144; Significance: 8e-76; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 2557442 - 2557184
Alignment:
Q  1 tattaaatggaaatgttaatttgtgctattaagatataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaat 100  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  2557442 tattaaagggaaatgttaatttgtgctattaagacataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaac 2557343  T
Q  101 ttcttagtgatttgaatgcacagcttttagagaacatttannnnnnngggtt---------------tcaaatggcacaagttaaactatcctttattaa 185  Q
    ||||||||||| |||||||||| |||||||||||||||||       |||||               || || |||||||||||||||| ||||||||||    
T  2557342 ttcttagtgatgtgaatgcacaacttttagagaacatttatttttttgggtttcttaacatgtgtgctctaagggcacaagttaaactaccctttattaa 2557243  T
Q  186 atatactttgacattagggctcaaaatgagtagagttgaatcaaactttcttcatctca 244  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||    
T  2557242 atatactttgacgttagggctcaaaatgagtagagctgaatcaaactttcttcagctca 2557184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 38 - 98
Target Start/End: Original strand, 2615116 - 2615176
Alignment:
Q  38 aagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatcttta 98  Q
    |||||||||||||||||||||||||| || ||||||||||||| |||||||||||| ||||    
T  2615116 aagttaatgaatcaaatataaaaatagttcattagaatgtgtgcattatatttaattttta 2615176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 40 - 121
Target Start/End: Complemental strand, 30323170 - 30323089
Alignment:
Q  40 gttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagtgatttgaatgcac 121  Q
    ||||||| |||||||||| ||||| |||||| |||||| ||||||| ||||||||||||| || ||| ||| ||||||||||    
T  30323170 gttaatgcatcaaatatagaaatagtttattggaatgtatgtattacatttaatctttaactttttaatgaattgaatgcac 30323089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 2616973 - 2617061
Alignment:
Q  11 aaatgttaatttgtgctattaagatataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaa 99  Q
    ||||| ||| ||||||| |||| | | |||||||||||||||||||||||||| |||||| | |||| || |||| |||||| ||||||    
T  2616973 aaatgctaacttgtgctcttaaaacacaagttaatgaatcaaatataaaaatagtttattgggatgtatgcattacatttaacctttaa 2617061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 99
Target Start/End: Complemental strand, 17515489 - 17515399
Alignment:
Q  9 ggaaatgttaatttgtgctattaagatataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaa 99  Q
    ||||||||||| ||||||  | |||||| || ||||||| ||||||||  ||||| ||||||  ||| ||||||||  |||||||||||||    
T  17515489 ggaaatgttaacttgtgccctcaagatacaatttaatgattcaaatatgtaaataatttattgaaatatgtgtattgcatttaatctttaa 17515399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 122
Target Start/End: Original strand, 4844441 - 4844498
Alignment:
Q  65 tttattagaatgtgtgtattatatttaatctttaatttcttagtgatttgaatgcaca 122  Q
    |||||| |||||||||||||||||||||| ||||| || ||| | | |||||||||||    
T  4844441 tttattggaatgtgtgtattatatttaatatttaactttttaataaattgaatgcaca 4844498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 122
Target Start/End: Original strand, 26740739 - 26740852
Alignment:
Q  9 ggaaatgttaatttgtgctattaagatataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagt 108  Q
    ||||||||||| ||||||| |||||| | | |||||||||||||||||||||||| |||||| |||| ||||||||| || |||||||||| || ||| |    
T  26740739 ggaaatgttaacttgtgctcttaagacacacgttaatgaatcaaatataaaaatattttattggaatatgtgtattacatgtaatctttaactttttaat 26740838  T
Q  109 gatttgaatgcaca 122  Q
    || |||||||||||    
T  26740839 gaattgaatgcaca 26740852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 29 - 122
Target Start/End: Original strand, 42674019 - 42674112
Alignment:
Q  29 ttaagatataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagtgatttgaatgcaca 122  Q
    |||||||| ||||||||||| |||||||||||||| || ||| |||||| || ||||||||||||||||||||| ||| ||| |||||||||||    
T  42674019 ttaagatacaagttaatgaaacaaatataaaaataattcattggaatgtatgcattatatttaatctttaattttttaatgagttgaatgcaca 42674112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 122
Target Start/End: Complemental strand, 31217065 - 31216952
Alignment:
Q  9 ggaaatgttaatttgtgctattaagatataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagt 108  Q
    ||||||| ||| ||||||  |||||| | |||||||| ||||||||||| ||||  |||||| ||| |||||||||| ||||||||||||| || ||| |    
T  31217065 ggaaatgctaacttgtgcccttaagacacaagttaataaatcaaatatagaaatggtttattggaaggtgtgtattacatttaatctttaactttttaat 31216966  T
Q  109 gatttgaatgcaca 122  Q
    || |||||||||||    
T  31216965 gaattgaatgcaca 31216952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 122
Target Start/End: Complemental strand, 49250200 - 49250087
Alignment:
Q  9 ggaaatgttaatttgtgctattaagatataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagt 108  Q
    ||||||||||| |||| |  ||||| || | ||||||  |||||||||||||||| ||||||  ||||| ||||||| ||||||||||||| || ||| |    
T  49250200 ggaaatgttaacttgtacccttaaggtacaggttaatacatcaaatataaaaatagtttattgaaatgtctgtattacatttaatctttaactttttaat 49250101  T
Q  109 gatttgaatgcaca 122  Q
    || |||||||||||    
T  49250100 gaattgaatgcaca 49250087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 122
Target Start/End: Complemental strand, 55323073 - 55322989
Alignment:
Q  38 aagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagtgatttgaatgcaca 122  Q
    |||||| ||||||||||||| ||||| |||||| |||| |||| |||| ||||||||||||| || ||| ||| |||||||||||    
T  55323073 aagttagtgaatcaaatatagaaataatttattggaatttgtgcattacatttaatctttaactttttaatgaattgaatgcaca 55322989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 41 - 99
Target Start/End: Original strand, 9319892 - 9319950
Alignment:
Q  41 ttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaa 99  Q
    ||||| ||||||||||||||||| ||||||  |||||||| ||||||||||||||||||    
T  9319892 ttaattaatcaaatataaaaataatttattgcaatgtgtgcattatatttaatctttaa 9319950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 99
Target Start/End: Complemental strand, 41236148 - 41236087
Alignment:
Q  38 aagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaa 99  Q
    |||||||| ||||||||||| ||||| ||||||| |||||||| |||| |||||||||||||    
T  41236148 aagttaataaatcaaatatagaaataatttattaaaatgtgtgcattacatttaatctttaa 41236087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 38 - 122
Target Start/End: Complemental strand, 31204441 - 31204357
Alignment:
Q  38 aagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagtgatttgaatgcaca 122  Q
    |||||||| ||||||||||| ||||  |||||| ||| |||||||||| ||||||||||||| || ||| | | |||||||||||    
T  31204441 aagttaataaatcaaatatagaaatggtttattggaaggtgtgtattacatttaatctttaactttttaataaattgaatgcaca 31204357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 122
Target Start/End: Complemental strand, 50328531 - 50328420
Alignment:
Q  11 aaatgttaatttgtgctattaagatataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagtga 110  Q
    ||||||||| |||||   ||||| || |||||||||||||| ||||| |||||   |||| ||||||||| |||| ||||||||||||| || ||| |||    
T  50328531 aaatgttaacttgtgtccttaaggtacaagttaatgaatcagatatagaaataggatattggaatgtgtgcattacatttaatctttaactttttaatga 50328432  T
Q  111 tttgaatgcaca 122  Q
     ||| |||||||    
T  50328431 attggatgcaca 50328420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 119
Target Start/End: Original strand, 53133448 - 53133558
Alignment:
Q  9 ggaaatgttaatttgtgctattaagatataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagt 108  Q
    ||||||||||| ||||||  |||||  | ||||||||||| |||||||| |||||  | ||| |||| |||| |||| ||||||||||||| || ||| |    
T  53133448 ggaaatgttaacttgtgcccttaaggcacaagttaatgaaacaaatatagaaataactcattggaatatgtgcattacatttaatctttaaatttttaat 53133547  T
Q  109 gatttgaatgc 119  Q
    || ||||||||    
T  53133548 gagttgaatgc 53133558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 122
Target Start/End: Original strand, 37056185 - 37056270
Alignment:
Q  38 aagttaatgaatcaaatataa-aaatactttattagaatgtgtgtattatatttaatctttaatttcttagtgatttgaatgcaca 122  Q
    ||||||||||||||||||||| ||||| |||||| ||| | ||| |||| ||||||||||||| || ||| ||| |||||| ||||    
T  37056185 aagttaatgaatcaaatataataaataatttattggaaagggtgcattaaatttaatctttaactttttaatgaattgaatacaca 37056270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 99
Target Start/End: Original strand, 38354254 - 38354343
Alignment:
Q  10 gaaatgttaatttgtgctattaagatataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaa 99  Q
    |||||||||| |||||   |||||||| |||||||||||||||||||| ||||| ||||||  ||||| || |||| | ||||| |||||    
T  38354254 gaaatgttaacttgtgtccttaagatacaagttaatgaatcaaatatagaaataatttattgaaatgtatgcattacaattaatgtttaa 38354343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 99
Target Start/End: Original strand, 47388488 - 47388533
Alignment:
Q  54 tataaaaatactttattagaatgtgtgtattatatttaatctttaa 99  Q
    |||||||||| ||||||  ||||||||||||| |||||||||||||    
T  47388488 tataaaaatattttattgaaatgtgtgtattacatttaatctttaa 47388533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 99
Target Start/End: Original strand, 17340339 - 17340387
Alignment:
Q  51 aaatataaaaatactttattagaatgtgtgtattatatttaatctttaa 99  Q
    |||||| |||||| |||||| ||||||||| |||| |||||||||||||    
T  17340339 aaatatgaaaatagtttattggaatgtgtgcattacatttaatctttaa 17340387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 122
Target Start/End: Complemental strand, 45220061 - 45219989
Alignment:
Q  50 caaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagtgatttgaatgcaca 122  Q
    ||||| || ||||| | |||| ||||| |||||||| |||||||||||||| | ||| ||| |||||||||||    
T  45220061 caaatgtataaatattatattggaatgcgtgtattaaatttaatctttaatgttttaatgaattgaatgcaca 45219989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 122
Target Start/End: Complemental strand, 40298414 - 40298303
Alignment:
Q  11 aaatgttaatttgtgctattaagatataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagtga 110  Q
    ||||||||||||||||| |||||||| |||||||| | | ||||||||||||| |||||||||||||||  |||| |||||||||||||  | ||| |||    
T  40298414 aaatgttaatttgtgctcttaagatacaagttaataagttaaatataaaaataatttattagaatgtgtacattacatttaatctttaacattttaatga 40298315  T
Q  111 tttgaatgcaca 122  Q
     |||||||||||    
T  40298314 attgaatgcaca 40298303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 122
Target Start/End: Original strand, 19961516 - 19961634
Alignment:
Q  4 taaatggaaatgttaatttgtgctattaagatataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttc 103  Q
    |||| |||||||||||||||||   ||| || | ||||||||||||||||  || ||||| |||||| |||||||||||||  ||||||||||||||||     
T  19961516 taaagggaaatgttaatttgtgtccttatgacacaagttaatgaatcaaaagtagaaatagtttattggaatgtgtgtatttcatttaatctttaatttt 19961615  T
Q  104 ttagtgatttgaatgcaca 122  Q
    ||| | | |||||||||||    
T  19961616 ttaataaattgaatgcaca 19961634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 41 - 96
Target Start/End: Complemental strand, 730851 - 730796
Alignment:
Q  41 ttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctt 96  Q
    ||||||| ||||||||| ||||| ||||||||||||||||||||| ||||||||||    
T  730851 ttaatgattcaaatatagaaataatttattagaatgtgtgtattacatttaatctt 730796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 120
Target Start/End: Original strand, 3938374 - 3938485
Alignment:
Q  9 ggaaatgttaatttgtgctattaagatataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagt 108  Q
    |||||| |||||||||||| |||||| | |||||||||| | ||||||| ||||| |||||| |||||| || |||  ||||||| | |||||| ||| |    
T  3938374 ggaaatattaatttgtgctcttaagacacaagttaatgatttaaatatagaaataatttattggaatgtatgcattgcatttaatatctaattttttaat 3938473  T
Q  109 gatttgaatgca 120  Q
    || |||||||||    
T  3938474 gaattgaatgca 3938485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 11 - 122
Target Start/End: Original strand, 30685546 - 30685657
Alignment:
Q  11 aaatgttaatttgtgctattaagatataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagtga 110  Q
    ||||||||| ||||||| |||||| ||||  ||||||| |||||||| ||||| ||||||  ||| |||| |||| ||||||| |||| ||| ||| |||    
T  30685546 aaatgttaacttgtgctcttaagacataaactaatgaaacaaatatagaaatagtttattgaaatatgtgcattacatttaatttttagttttttaatga 30685645  T
Q  111 tttgaatgcaca 122  Q
     |||||||||||    
T  30685646 attgaatgcaca 30685657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 122
Target Start/End: Complemental strand, 14576085 - 14575972
Alignment:
Q  9 ggaaatgttaatttgtgctattaagatataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagt 108  Q
    ||||||||||||||||||  |||||| |||||||||| | | ||||||| ||||| |||||   |||||||| |||| ||| ||| ||||| || ||| |    
T  14576085 ggaaatgttaatttgtgcccttaagacataagttaataagtaaaatatagaaatagtttatcgaaatgtgtgcattacattgaatatttaactttttaat 14575986  T
Q  109 gatttgaatgcaca 122  Q
    || |||||||||||    
T  14575985 gaattgaatgcaca 14575972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 42 - 122
Target Start/End: Original strand, 30721399 - 30721479
Alignment:
Q  42 taatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagtgatttgaatgcaca 122  Q
    ||||||| |||||||| ||||| ||||||  |||||||| |||| ||||||| |||||||| ||| ||| |||||||||||    
T  30721399 taatgaaacaaatatagaaatagtttattgaaatgtgtgcattacatttaatttttaattttttaatgagttgaatgcaca 30721479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 38 - 122
Target Start/End: Original strand, 33208416 - 33208500
Alignment:
Q  38 aagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagtgatttgaatgcaca 122  Q
    |||||||||||||||||||| ||||| ||||||  ||||| ||||||| ||||||| ||||| || ||| ||| | |||||||||    
T  33208416 aagttaatgaatcaaatatagaaataatttattgaaatgtatgtattaaatttaatatttaactttttaatgaatggaatgcaca 33208500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 40 - 118
Target Start/End: Original strand, 4746048 - 4746126
Alignment:
Q  40 gttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagtgatttgaatg 118  Q
    |||||||||||||||||| ||||| |||||| |||||| | |||| |||||| ||||||| || ||| ||| |||||||    
T  4746048 gttaatgaatcaaatatagaaataatttattggaatgtatttattttatttattctttaactttttaatgaattgaatg 4746126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 14622610 - 14622539
Alignment:
Q  9 ggaaatgttaatttgtgctattaagatataagttaatgaatcaaatataaaaatactttattagaatgtgtg 80  Q
    ||||||| ||||||||||| |||| | | |||||||||| ||||||||| ||||| |||||| ||| |||||    
T  14622610 ggaaatgctaatttgtgctcttaaaacacaagttaatgattcaaatatagaaataatttattggaaggtgtg 14622539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 99
Target Start/End: Complemental strand, 3257544 - 3257486
Alignment:
Q  41 ttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaa 99  Q
    ||||| ||||||||||||||||| |||||| |||| |||| |||  |||||||||||||    
T  3257544 ttaataaatcaaatataaaaatagtttattggaatatgtgcatttcatttaatctttaa 3257486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 36527423 - 36527484
Alignment:
Q  38 aagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaa 99  Q
    ||||||||| |||||||||| ||||| |||||| || |||||| |||  |||||||||||||    
T  36527423 aagttaatgtatcaaatatagaaatagtttattggagtgtgtgcattgcatttaatctttaa 36527484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 25983052 - 25983120
Alignment:
Q  31 aagatataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaa 99  Q
    |||| |||||||||||| | ||||||| ||||| |||||| |||| |||| |||  |||||||||||||    
T  25983052 aagacataagttaatgatttaaatatagaaataatttattggaatatgtgcattgcatttaatctttaa 25983120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 15 - 122
Target Start/End: Original strand, 40740670 - 40740777
Alignment:
Q  15 gttaatttgtgctattaagatataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagtgatttg 114  Q
    ||||| ||||||  |||||||| ||||||| |||||||||||| || || |||||||||||||||  |||| ||||||||||||| || ||| |||||||    
T  40740670 gttaacttgtgcccttaagatacaagttaaagaatcaaatatagaagtagtttattagaatgtgtacattacatttaatctttaactttttaatgatttg 40740769  T
Q  115 aatgcaca 122  Q
    ||||||||    
T  40740770 aatgcaca 40740777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 122
Target Start/End: Complemental strand, 4993390 - 4993279
Alignment:
Q  9 ggaaatgttaatttgtgctattaagatataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagt 108  Q
    ||||||||||||||||||| |||||  |||||||||||| ||||||||| |||||   |||| |||| ||||||||  ||||||||||||| || ||| |    
T  4993390 ggaaatgttaatttgtgctcttaaggcataagttaatgattcaaatatagaaata--atatttgaatatgtgtattgcatttaatctttaactttttaat 4993293  T
Q  109 gatttgaatgcaca 122  Q
    || || ||||||||    
T  4993292 gaattaaatgcaca 4993279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 38 - 98
Target Start/End: Complemental strand, 4989351 - 4989291
Alignment:
Q  38 aagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatcttta 98  Q
    |||||||| ||||||||||| ||||| ||||||  ||||||||||||| ||||||||||||    
T  4989351 aagttaattaatcaaatatagaaataatttattgtaatgtgtgtattacatttaatcttta 4989291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 38 - 102
Target Start/End: Complemental strand, 39108669 - 39108605
Alignment:
Q  38 aagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaattt 102  Q
    |||||||||| ||||||||||||||| |||||| ||||||||| |||  |||||| |||||||||    
T  39108669 aagttaatgattcaaatataaaaataatttattggaatgtgtgcattgcatttaaactttaattt 39108605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 122
Target Start/End: Complemental strand, 5957156 - 5957045
Alignment:
Q  11 aaatgttaatttgtgctattaagatataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagtga 110  Q
    ||||||||| ||||| | ||||| || |||||||||||||||   || ||||| |||||| ||||||| | |||  || |||||||||| || ||| |||    
T  5957156 aaatgttaacttgtgttcttaaggtacaagttaatgaatcaatagtagaaataatttattggaatgtgcgcatttcatataatctttaactttttaatga 5957057  T
Q  111 tttgaatgcaca 122  Q
     |||||||||||    
T  5957056 attgaatgcaca 5957045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 122
Target Start/End: Original strand, 32062275 - 32062359
Alignment:
Q  38 aagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaat-ttcttagtgatttgaatgcaca 122  Q
    |||||||||||||||||||| |||||  ||||| ||||||||  |||| ||||||||||| || || ||| ||| |||||||||||    
T  32062275 aagttaatgaatcaaatatagaaata-gttattggaatgtgtacattacatttaatcttttatctttttaatgaattgaatgcaca 32062359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 17 - 120
Target Start/End: Complemental strand, 10881981 - 10881878
Alignment:
Q  17 taatttgtgctattaagatataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagtgatttgaa 116  Q
    ||||||||||  |||| ||| ||||||||| |||||||||| ||||  |||||||||||||||| |||| |||||||||||||||| ||| ||| |||||    
T  10881981 taatttgtgcccttaatatacaagttaatgcatcaaatatagaaattgtttattagaatgtgtgcattacatttaatctttaattttttaatgaattgaa 10881882  T
Q  117 tgca 120  Q
    ||||    
T  10881881 tgca 10881878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 122
Target Start/End: Complemental strand, 15279163 - 15279050
Alignment:
Q  9 ggaaatgttaatttgtgctattaagatataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagt 108  Q
    |||||||||||||| |||  |||||| | |||||||||| ||||||||| ||||| |||||||||||||||| |||  ||||||| ||||| || ||| |    
T  15279163 ggaaatgttaatttctgcccttaagacacaagttaatgattcaaatatagaaataatttattagaatgtgtgcattgcatttaatatttaactttttaat 15279064  T
Q  109 gatttgaatgcaca 122  Q
     | |||||||||||    
T  15279063 aaattgaatgcaca 15279050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 38 - 122
Target Start/End: Complemental strand, 51295848 - 51295764
Alignment:
Q  38 aagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagtgatttgaatgcaca 122  Q
    ||||||||||||||||| || ||||| |||||| ||||||||| |||| ||||||||||||| || ||| ||| |||||||||||    
T  51295848 aagttaatgaatcaaatgtagaaataatttattggaatgtgtgcattacatttaatctttaactttttaatgaattgaatgcaca 51295764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 120
Target Start/End: Complemental strand, 33828203 - 33828121
Alignment:
Q  38 aagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagtgatttgaatgca 120  Q
    |||||||||||||||||||| ||||| |||||| |||||||||||||| || |||||||||| || ||| | | |||||||||    
T  33828203 aagttaatgaatcaaatatataaatagtttattggaatgtgtgtattacatctaatctttaactttttaataaattgaatgca 33828121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 120
Target Start/End: Original strand, 33839762 - 33839844
Alignment:
Q  38 aagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagtgatttgaatgca 120  Q
    |||||||||||||||||||| ||||| |||||| |||||||||||||| || |||||||||| || ||| | | |||||||||    
T  33839762 aagttaatgaatcaaatatataaatagtttattggaatgtgtgtattacatctaatctttaactttttaataaattgaatgca 33839844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 99
Target Start/End: Complemental strand, 42549347 - 42549258
Alignment:
Q  10 gaaatgttaatttgtgctattaagatataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaa 99  Q
    |||||||||| ||||||  ||||| || |||||||||| |||||||||||||||  | ||| |||||||| |||| |||||| |||||||    
T  42549347 gaaatgttaagttgtgcctttaaggtacaagttaatgattcaaatataaaaataaataattggaatgtgtatattttatttagtctttaa 42549258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 122
Target Start/End: Complemental strand, 34711071 - 34710960
Alignment:
Q  11 aaatgttaatttgtgctattaagatataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagtga 110  Q
    ||||||||| ||||||  ||| || | ||||||||||| |||||||| |||||  | |||  ||||||||||||| ||||||||||||  || ||| |||    
T  34711071 aaatgttaacttgtgcccttatgacacaagttaatgaaacaaatatagaaatagctcattgaaatgtgtgtattacatttaatctttagctttttaatga 34710972  T
Q  111 tttgaatgcaca 122  Q
     |||||||||||    
T  34710971 gttgaatgcaca 34710960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 51050170 - 51050117
Alignment:
Q  49 tcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaattt 102  Q
    ||||||||| ||||| |||||| ||||||||||| || |||||||| |||||||    
T  51050170 tcaaatatataaataatttattggaatgtgtgtaatacatttaatcgttaattt 51050117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 140
Target Start/End: Complemental strand, 29587251 - 29587151
Alignment:
Q  41 ttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagtgatttgaatgcacagc-ttttagagaacattt 139  Q
    ||||||| ||||||||| |||||  ||||| ||||||||| ||| |||||| ||||||| || | | ||  |||||||||||   |||||||||||||||    
T  29587251 ttaatgattcaaatatagaaataaattattggaatgtgtgcattttatttagtctttaacttttaaatgcattgaatgcacataattttagagaacattt 29587152  T
Q  140 a 140  Q
    |    
T  29587151 a 29587151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 97
Target Start/End: Original strand, 52124804 - 52124836
Alignment:
Q  65 tttattagaatgtgtgtattatatttaatcttt 97  Q
    |||||||||||||||| ||||||||||||||||    
T  52124804 tttattagaatgtgtgcattatatttaatcttt 52124836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 38 - 122
Target Start/End: Complemental strand, 122572 - 122488
Alignment:
Q  38 aagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagtgatttgaatgcaca 122  Q
    |||||||||||||||||||||||||| |||||| ||| || ||||||| |||||||||||||||| ||| | | |||||||||||    
T  122572 aagttaatgaatcaaatataaaaatattttattggaacgtatgtattacatttaatctttaattttttaatcaattgaatgcaca 122488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 40 - 122
Target Start/End: Complemental strand, 37700360 - 37700278
Alignment:
Q  40 gttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagtgatttgaatgcaca 122  Q
    ||||||||||||||||| |||||| |||||| ||||||||| |||||||||||| || ||||| ||| ||| |||||||||||    
T  37700360 gttaatgaatcaaatatgaaaatagtttattggaatgtgtgcattatatttaattttaaattttttaatgaattgaatgcaca 37700278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 6 - 99
Target Start/End: Complemental strand, 24657388 - 24657295
Alignment:
Q  6 aatggaaatgttaatttgtgctattaagatataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaa 99  Q
    |||||||||| ||||||||||  |||||| |||| | ||||| ||||||||| ||||  |||||| ||||||||| ||||||||||||||||||    
T  24657388 aatggaaatgataatttgtgcccttaagacataaataaatgattcaaatatagaaattatttattggaatgtgtgcattatatttaatctttaa 24657295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 37 - 102
Target Start/End: Complemental strand, 12931594 - 12931530
Alignment:
Q  37 taagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaattt 102  Q
    ||||||||||||||||||||| ||||| |||||| |||||||||||||| ||||||| ||||||||    
T  12931594 taagttaatgaatcaaatatataaatagtttattggaatgtgtgtattacatttaat-tttaattt 12931530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 139
Target Start/End: Original strand, 20378993 - 20379122
Alignment:
Q  11 aaatgttaatttgtgctattaagatataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagtga 110  Q
    |||||||||||| |||  |||| | | |||||||||| ||||||||| |||||  ||||||||||||||| ||| |||||| ||||||| || | | ||     
T  20378993 aaatgttaatttatgcccttaatacacaagttaatgattcaaatatagaaataaattattagaatgtgtgcattttatttagtctttaacttttaaatgc 20379092  T
Q  111 tttgaatgcac-agcttttagagaacattt 139  Q
     |||||||||| |  |||||||||||||||    
T  20379093 attgaatgcacaaaattttagagaacattt 20379122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 49447715 - 49447627
Alignment:
Q  11 aaatgttaatttgtgctattaagatataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaa 99  Q
    ||||||||| | ||||  |||||| | || ||||||| |||||||||||||||  ||||| ||||||||| ||| |||||| |||||||    
T  49447715 aaatgttaactcgtgcctttaagacacaaattaatgattcaaatataaaaataaattattggaatgtgtgcattttatttagtctttaa 49447627  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 122
Target Start/End: Complemental strand, 28392265 - 28392186
Alignment:
Q  43 aatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagtgatttgaatgcaca 122  Q
    ||||||||||||| | ||||| ||||||  |||||||| |||| ||||||||||||| || ||| ||  |||||||||||    
T  28392265 aatgaatcaaataaacaaatagtttattgaaatgtgtgcattacatttaatctttaactttttaatgtattgaatgcaca 28392186  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 97
Target Start/End: Complemental strand, 49230124 - 49230069
Alignment:
Q  40 gttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatcttt 97  Q
    ||||||||||||||||||||||   | ||||  |||||||||||||||||||||||||    
T  49230124 gttaatgaatcaaatataaaaaa--tatattgaaatgtgtgtattatatttaatcttt 49230069  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 43177021 - 43176964
Alignment:
Q  9 ggaaatgttaatttgtgctattaagatataagttaatgaatcaaatataaaaatactt 66  Q
    ||||||| |||||||||| || |||| | |||||||| ||||||||||| ||||||||    
T  43177021 ggaaatgctaatttgtgcgatcaagacacaagttaattaatcaaatatagaaatactt 43176964  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 122
Target Start/End: Original strand, 53287384 - 53287497
Alignment:
Q  9 ggaaatgttaatttgtgctattaagatataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagt 108  Q
    ||||||||||| ||||||  |||||  | |||||||||| ||||||||| ||||  |||||| ||||||||| |||  ||||||| | ||| || | | |    
T  53287384 ggaaatgttaacttgtgcccttaagccacaagttaatgattcaaatatagaaatcatttattggaatgtgtgcattgcatttaatttgtaacttttcaat 53287483  T
Q  109 gatttgaatgcaca 122  Q
    || |||||||||||    
T  53287484 gaattgaatgcaca 53287497  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 93
Target Start/End: Original strand, 28554166 - 28554218
Alignment:
Q  41 ttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaat 93  Q
    ||||||| ||||||||| ||||| ||||||  |||||||||||| ||||||||    
T  28554166 ttaatgattcaaatatagaaataatttattgaaatgtgtgtattgtatttaat 28554218  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 93
Target Start/End: Complemental strand, 39990856 - 39990772
Alignment:
Q  9 ggaaatgttaatttgtgctattaagatataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaat 93  Q
    ||||||| ||| ||||||  | |||| | |||||||||||||||| || |||||| ||||||  |||||||| |||| |||||||    
T  39990856 ggaaatgctaacttgtgccctcaagacacaagttaatgaatcaaagatgaaaataatttattgaaatgtgtgaattacatttaat 39990772  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 23358453 - 23358514
Alignment:
Q  38 aagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaa 99  Q
    ||||||||||||||| |||||||||| ||||||  |||| ||||||||||||||||||||||    
T  23358453 aagttaatgaatcaattataaaaatattttatttaaatgcgtgtattatatttaatctttaa 23358514  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 102
Target Start/End: Complemental strand, 43252004 - 43251940
Alignment:
Q  38 aagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaattt 102  Q
    |||||||||| | ||||||| ||||| ||||||||||||||||| ||| ||||||||||||||||    
T  43252004 aagttaatgatttaaatatagaaataatttattagaatgtgtgttttacatttaatctttaattt 43251940  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 39983062 - 39983123
Alignment:
Q  38 aagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaa 99  Q
    |||||||||| | ||||||| ||||| |||||||||||| ||||||| ||||||||||||||    
T  39983062 aagttaatgattaaaatatagaaataatttattagaatgcgtgtattctatttaatctttaa 39983123  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 97
Target Start/End: Original strand, 37828346 - 37828405
Alignment:
Q  38 aagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatcttt 97  Q
    |||||||| ||||||||||| ||||| |||||| ||||| |||||||| |||||||||||    
T  37828346 aagttaataaatcaaatatagaaatagtttattggaatgcgtgtattaaatttaatcttt 37828405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 99
Target Start/End: Original strand, 23363754 - 23363812
Alignment:
Q  41 ttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaa 99  Q
    |||||||||||| |||||||||| |||||| ||||| |||||||| |||| ||||||||    
T  23363754 ttaatgaatcaattataaaaatattttattggaatgcgtgtattacattttatctttaa 23363812  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 93
Target Start/End: Complemental strand, 3398969 - 3398914
Alignment:
Q  38 aagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaat 93  Q
    |||||||| ||||||||||||||||| ||||||  | ||||||||||| |||||||    
T  3398969 aagttaataaatcaaatataaaaatagtttattgcattgtgtgtattaaatttaat 3398914  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 99
Target Start/End: Complemental strand, 3767279 - 3767200
Alignment:
Q  21 ttgtgctattaagatataagttaatgaatcaaatat-aaaaatactttattagaatgtgtgtattatatttaatctttaa 99  Q
    ||||||| |||||||| ||||||||||||||||| | ||||||| |||||| |||| | || |||| ||||||| |||||    
T  3767279 ttgtgcttttaagatacaagttaatgaatcaaatgtaaaaaataatttatttgaatatatgcattacatttaatatttaa 3767200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 122
Target Start/End: Original strand, 25971417 - 25971528
Alignment:
Q  11 aaatgttaatttgtgctattaagatataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagtga 110  Q
    ||||||||| |||||   ||||| || || |||||  |||||||||||||||  |||||| |||||  || |||| ||||||| |||||||| ||| |||    
T  25971417 aaatgttaacttgtgtctttaaggtacaaattaatacatcaaatataaaaattgtttattggaatgcatgcattacatttaatatttaattttttaatga 25971516  T
Q  111 tttgaatgcaca 122  Q
     |||||||||||    
T  25971517 attgaatgcaca 25971528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 120
Target Start/End: Complemental strand, 48634060 - 48633969
Alignment:
Q  29 ttaagatataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagtgatttgaatgca 120  Q
    |||||| | |||||||| ||| ||||||||||||| |||||| ||||||||  ||| | |||| ||||||| || ||| ||| |||||||||    
T  48634060 ttaagacacaagttaataaataaaatataaaaatagtttattggaatgtgtacattgtctttagtctttaactttttaatgaattgaatgca 48633969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 122
Target Start/End: Original strand, 25594582 - 25594648
Alignment:
Q  56 taaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagtgatttgaatgcaca 122  Q
    |||||||| | |||||||||||||| |||| |||||||||||||| | ||| | | |||||||||||    
T  25594582 taaaaataatgtattagaatgtgtgcattaaatttaatctttaatattttaataaattgaatgcaca 25594648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 122
Target Start/End: Complemental strand, 44966183 - 44966070
Alignment:
Q  9 ggaaatgttaatttgtgctattaagatataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagt 108  Q
    ||||||||||| ||||||  |||||  | |||||||||| ||||||||| || || |||||| ||||||||| |||  ||||||||||||| || ||| |    
T  44966183 ggaaatgttaacttgtgcccttaaggcacaagttaatgattcaaatatagaattaatttattggaatgtgtgcattgcatttaatctttaactttttaat 44966084  T
Q  109 gatttgaatgcaca 122  Q
    || |||||||||||    
T  44966083 gaattgaatgcaca 44966070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 122
Target Start/End: Complemental strand, 31663555 - 31663445
Alignment:
Q  11 aaatgttaatttgtgctattaagatataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagtga 110  Q
    ||||||||| |||||  |||||  || |||||||| || |||||||| ||||| |||||| ||||||||| |||||||||||| ||||| || | | |||    
T  31663555 aaatgttaacttgtgtcattaaagtacaagttaattaaacaaatatataaatagtttattggaatgtgtgcattatatttaat-tttaacttttgaatga 31663457  T
Q  111 tttgaatgcaca 122  Q
     |||||||||||    
T  31663456 attgaatgcaca 31663445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 34242357 - 34242437
Alignment:
Q  10 gaaatgttaatttgtgctattaagatataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatattt 90  Q
    |||||| ||| |||||  |||||  ||||||||||||||||||||||| ||||| |||||| |||||| || |||| ||||    
T  34242357 gaaatgctaaattgtgtcattaaagtataagttaatgaatcaaatatataaataatttattggaatgtatgcattacattt 34242437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 122
Target Start/End: Complemental strand, 40711303 - 40711219
Alignment:
Q  38 aagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagtgatttgaatgcaca 122  Q
    ||||| |||| ||||||||||||||  ||||||  |||||||||||| |||||||| ||||| || ||| ||| || ||||||||    
T  40711303 aagttcatgattcaaatataaaaattatttattgaaatgtgtgtattgtatttaatttttaactttttaatgaattaaatgcaca 40711219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 100
Target Start/End: Original strand, 14839593 - 14839682
Alignment:
Q  11 aaatgttaatttgtgctattaagatataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaat 100  Q
    |||||||||||| |  | |||||||| |||||||| | ||||||||||||||| | ||||| | | |||| |||| ||||||| ||||||    
T  14839593 aaatgttaatttatattcttaagatacaagttaataactcaaatataaaaataatgtattaaattatgtgaattaaatttaatttttaat 14839682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 122
Target Start/End: Original strand, 66112 - 66228
Alignment:
Q  6 aatggaaatgttaatttgtgctattaagatataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttctt 105  Q
    ||||||||||||||  ||||   |||||| | ||||||||||||||||| ||  |||| |||||| ||||   || |||| ||||||| ||||| || ||    
T  66112 aatggaaatgttaacgtgtgtctttaagacacaagttaatgaatcaaatgtaggaatattttattggaattcatgcattacatttaatttttaacttttt 66211  T
Q  106 agtgatttgaatgcaca 122  Q
    ||||| |||||||||||    
T  66212 agtgaattgaatgcaca 66228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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