View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14992_high_1 (Length: 585)
Name: NF14992_high_1
Description: NF14992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14992_high_1 |
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| [»] chr7 (1 HSPs) |
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| [»] scaffold0400 (1 HSPs) |
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| [»] scaffold0365 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 521; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 1 - 585
Target Start/End: Original strand, 451001 - 451596
Alignment:
| Q |
1 |
catcatcatgaactttctaaactagatctaacattcttgatgagtttgattatctattttcttgtttgctttattgtaaaggaaattgtgacaaaaatgc |
100 |
Q |
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| T |
451001 |
catcattatgaactttctaaactagatctaacattcttgatgagttcgattatctagtttcttgtttgctttattgtaaaggaaattgtgacaaaaatgc |
451100 |
T |
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| Q |
101 |
atttatgagtaacttatctatgagttaatctgtcctgtatttatttcttgcttacttaaattaggttatgataactcatcctttattaactttg-tatct |
199 |
Q |
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| T |
451101 |
atttatgagtaacttatctatgagttaatctgtcctgtatttatttcttgcttacttaaattaggttatgataactcatcctttattaactttggtatct |
451200 |
T |
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| Q |
200 |
atttgggagttttcttca----------atcaagtacttattacttaatgtgtaaaccttagttttagagatagaaaatcaatttatcaatttactgtta |
289 |
Q |
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| T |
451201 |
atttgggagttttcttcattgtgcactaatcaagtacttattacttaatgtgtaaaccttagttttagagatagaaaatcaatttatcaatttactttta |
451300 |
T |
|
| Q |
290 |
taaattttccatgacattatttattaggatttgaatcttctcatttagatcctgacacaattttttgtttctttatataggacctagagaaagaaagagg |
389 |
Q |
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| T |
451301 |
taaattttccatgacattatttattaggatttgaatcttctcatttagttcctgacacaattttttgtctctttatataggacctagagaaagaaagagg |
451400 |
T |
|
| Q |
390 |
atgatggacgcaacattgggattatgacagtgaaatttgcaaaagtgttctatttcccagaactgctcatgtttgatatattgaattgaaaagagttgta |
489 |
Q |
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| T |
451401 |
atgatggacgcaacattgggattatgacagtgaaatttgcaaaagtgttctatttcccacaactgctcatgtttgatatattgaattgaaaagagttgta |
451500 |
T |
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| Q |
490 |
atttcttgggtttctggattttgtgcatttgttatgttataacttataataggtgttgcttatgcagcaccaacattgctcttgttttcatccctt |
585 |
Q |
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| T |
451501 |
atttcttgggtttctggattttgtgcatttgttatgttataacttataataggtgttgcctatgcagcaccaacattgctcttgttttcatccctt |
451596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 228 - 363
Target Start/End: Complemental strand, 4432791 - 4432656
Alignment:
| Q |
228 |
tattacttaatgtgtaaaccttagttttagagatagaaaatcaatttatcaatttactgttataaattttccatgacattatttattaggatttgaatct |
327 |
Q |
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||||||||||| |||| || ||||||||||||| ||||||||||||||||||||| |||||||||||| | || |||||||||||||||||| |||| |
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| T |
4432791 |
tattacttaatttgtagttctcagttttagagataaaaaatcaatttatcaatttacggttataaattttgctcgatattatttattaggatttggatct |
4432692 |
T |
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| Q |
328 |
tctcatttagatcctgacacaattttttgtttcttt |
363 |
Q |
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| T |
4432691 |
tctcatttagttcctaacaaaatgctttgttacttt |
4432656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 275 - 337
Target Start/End: Original strand, 14493984 - 14494046
Alignment:
| Q |
275 |
atcaatttactgttataaattttccatgacattatttattaggatttgaatcttctcatttag |
337 |
Q |
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| T |
14493984 |
atcaatttacttttataaattttacataaaattatttattaggatttggatcttctcatttag |
14494046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0400
Description:
Target: scaffold0400; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 275 - 337
Target Start/End: Complemental strand, 15458 - 15396
Alignment:
| Q |
275 |
atcaatttactgttataaattttccatgacattatttattaggatttgaatcttctcatttag |
337 |
Q |
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| T |
15458 |
atcaatttacttttataaattttacataaaattatttattaggatttggatcttctcatttag |
15396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0365
Description:
Target: scaffold0365; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 275 - 337
Target Start/End: Complemental strand, 16101 - 16039
Alignment:
| Q |
275 |
atcaatttactgttataaattttccatgacattatttattaggatttgaatcttctcatttag |
337 |
Q |
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| T |
16101 |
atcaatttacttttataaattttacataaaattatttattaggatttggatcttctcatttag |
16039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 9335345 - 9335304
Alignment:
| Q |
14 |
tttctaaactagatctaacattcttgatgagtttgattatct |
55 |
Q |
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| T |
9335345 |
tttctaaactagatgtaacattgttgatgagtttgattatct |
9335304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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