View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14992_high_3 (Length: 301)

Name: NF14992_high_3
Description: NF14992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14992_high_3
NF14992_high_3
[»] chr3 (1 HSPs)
chr3 (1-292)||(31980246-31980537)


Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 31980246 - 31980537
Alignment:
Q  1 tccgtcggagcttgatgaagaataatgggcagtttcttgattgcagcagggtctaatccttgaggtggttgagctggcggcgcgtggatggaggcggagt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31980246 tccgtcggagcttgatgaagaataatgggcagtttcttgattgcagcagggtctaatccttgaggtggttgagctggcggcgcgtggatggaggcggagt 31980345  T
Q  101 atgtcgtggtgatgtgagtatggtagcggcagacccaacgtgtgtagaagaagagaacgataacaagaaggaaaattgagaagagtacaataacgaagaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31980346 atgtcgtggtgatgtgagtatggtagcggcagacccaacgtgtgtagaagaagagaacgataacaagaaggaaaattgagaagagtacaataacgaagaa 31980445  T
Q  201 aagtgttctgcctttgatttctaggtctctatcatcaagctcagtgtagtgccagttcaatgatctggaattagggcttgacatgatgatgt 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31980446 aagtgttctgcctttgatttctaggtctctatcatcaagctcagtgtagtgccagttcaatgatctggaattagggcttgacatgatgatgt 31980537  T

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