View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14992_high_5 (Length: 239)
Name: NF14992_high_5
Description: NF14992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14992_high_5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 31980024 - 31980245
Alignment:
| Q |
18 |
attctaatgggtggttcttgaatcaaaatcttaggaaaagaagattcaactttgagagaacctctacaaagtggacaactagattgatgagttaaccact |
117 |
Q |
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| T |
31980024 |
attctaatgggtggttcttgaatcaaaatcttaggaaaagaaggttcaactttgagagaacctctacaaagtggacaactagattgatgagttaaccact |
31980123 |
T |
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| Q |
118 |
tatcaacacaatcacaatgaaaataatgttcacaccctggtaaaaccttcagtttctcaccgtctctaaattctccaagacaaatacaacactcagtctc |
217 |
Q |
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| T |
31980124 |
tatcaacacaatcacaatgaaaataatgttcacaccctggtaaaaccttcagtttctcaccgtctctaaattctccaagacaaatacaacactcagtctc |
31980223 |
T |
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| Q |
218 |
ttcccacgcgccgttctcgggg |
239 |
Q |
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| T |
31980224 |
ttcccacgcgccgttctcgggg |
31980245 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 187
Target Start/End: Original strand, 35772037 - 35772204
Alignment:
| Q |
20 |
tctaatgggtggttcttgaatcaaaatcttaggaaaagaagattcaactttgagagaacctctacaaagtggacaactagattgatgagttaaccactta |
119 |
Q |
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| T |
35772037 |
tctaataggtggttcttgaatcaaaatcttaggaaactctaaatcaatcttaagagaagctctacacaaaggacaactagaatgattcacaagccatgca |
35772136 |
T |
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| Q |
120 |
tcaacacaatcacaatgaaaataatgttcacaccctggtaaaaccttcagtttctcaccgtctctaaa |
187 |
Q |
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| T |
35772137 |
tcaacacattcacaatgaaaataatgatcacaactcggtaacactttcaccttctcaccatctctaaa |
35772204 |
T |
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