View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14992_low_2 (Length: 369)
Name: NF14992_low_2
Description: NF14992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14992_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 5388133 - 5388470
Alignment:
| Q |
1 |
tcatcaagcaatggaaaccatgaaatggttttgaatgtaaatggtgatgcctcccaaaattgtgatgagtcatgcatccaagactatgtgccccttttgc |
100 |
Q |
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| T |
5388133 |
tcatcaagcaatggaaaccatgaaacggttttgaatgtaaatggtgatgcctcccaaaattgtgatgagtcatgcatccaagactatgtgccccttttgc |
5388232 |
T |
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| Q |
101 |
agaaggtatgtatctcctaaaccactctagatagaacttatttttctcnnnnnnnnnnnnctatgaatatgaatttactctctaaaatatcagtcattaa |
200 |
Q |
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| T |
5388233 |
agaaggtatgtatctcctaaaccactctacatagaacttattttgtt-----gataataactatgaatatgaatttactctctaaaatatcagtcattaa |
5388327 |
T |
|
| Q |
201 |
ttttatttttaaagcattaatctctaaagtttatgaaagtttattatattaattcctaatattttaataacaaatattaaagtgatgaatttcatatact |
300 |
Q |
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| T |
5388328 |
ttttatttttaaagcattaatctct----------aaagtttattatattaattcctattattttaataacaaagattaaagtgacgaatttcatatact |
5388417 |
T |
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| Q |
301 |
ttaaaaatgtttattacttttatatgctttaaagatttaattagagagaaaaa |
353 |
Q |
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| T |
5388418 |
ttaaaaatgtttattacttttatatgctttaaagatttaattagagagaaaaa |
5388470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 5401943 - 5402307
Alignment:
| Q |
1 |
tcatcaagcaatggaaaccatgaaatggttttgaatgtaaatggtgatgcctcccaaaattgtgatgagtcatgcatccaagactatgtgccccttttgc |
100 |
Q |
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| T |
5401943 |
tcatcaagcaatggaaaccatgaaatggttttgaatgtaaatggtgatgtttcccaaaagtgtgatgagtcatgcatccaagactatgtgcctcttttgc |
5402042 |
T |
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| Q |
101 |
agaaggtatgtatctcctaaaccactctagatagaacttatttttctcnnnnnnnnnnnnctatgaatatgaatttactctctaaaatatcagtcattaa |
200 |
Q |
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| T |
5402043 |
agaaggtgtgtatctcctaaaccactctgcatataacttttttttgt----tgataataactatgaatatgaatttaatctctaaaatatcggtctttaa |
5402138 |
T |
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| Q |
201 |
ttttatttttaaagca----------------ttaatctctaaagtttatgaaagtttattatattaattcctaatattttaataacaaatattaaagtg |
284 |
Q |
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| T |
5402139 |
ttttatttttgaagtaaataaaattcgttgtcatagtctctatggtatatgaaag-ttattatattaattcctaatactttaataacaaagattaaagtg |
5402237 |
T |
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| Q |
285 |
atgaatttcatatactttaaaaatgtttattacttttatatgctttaaagatttaattagagagaaaaat |
354 |
Q |
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| T |
5402238 |
acgaatttcatatactttaaaaatgtttattacttttatatgctttagagattgaattagagagaaaaat |
5402307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 96
Target Start/End: Original strand, 5414894 - 5414955
Alignment:
| Q |
35 |
atgtaaatggtgatgcctcccaaaattgtgatgagtcatgcatccaagactatgtgcccctt |
96 |
Q |
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|||||||| || ||||||| ||||||||||| || ||| ||||| |||||| |||||||||| |
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| T |
5414894 |
atgtaaatagtcatgcctcacaaaattgtgaagaatcaggcatcaaagactctgtgcccctt |
5414955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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