View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14993_high_5 (Length: 206)
Name: NF14993_high_5
Description: NF14993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14993_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 163; Significance: 3e-87; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 19 - 185
Target Start/End: Original strand, 35388566 - 35388732
Alignment:
| Q |
19 |
atcacaagagccacgagctttctgataatagctattgaaagcataggaagcatgattttgaagtgtgtttggataataacaacttccaccaggttgaata |
118 |
Q |
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| T |
35388566 |
atcacaagagccacgagctttctgataatagctattgaaagcataggaagcatgattttgaagtgtgtttggataataacaacttccaccaggttgaata |
35388665 |
T |
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| Q |
119 |
ggaccgcaatcagcaccagctccacatgcataatttaaagcatcaatcagttgttgggtacctgctt |
185 |
Q |
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| T |
35388666 |
ggaccgcaatcagcaccagctccacatgcataatttaaagcatcaagcagttgttgggtacctgctt |
35388732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 56 - 161
Target Start/End: Original strand, 35392333 - 35392438
Alignment:
| Q |
56 |
aaagcataggaagcatgattttgaagtgtgtttggataataacaacttccaccaggttgaataggaccgcaatcagcaccagctccacatgcataattta |
155 |
Q |
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| T |
35392333 |
aaagcatatgaagcatgactttgaagtgtgtttggattaaagcagcttccaccaggctgaataggtccacaatcagctccatttgaacatgcataattta |
35392432 |
T |
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| Q |
156 |
aagcat |
161 |
Q |
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|||||| |
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| T |
35392433 |
aagcat |
35392438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 56 - 161
Target Start/End: Original strand, 35403103 - 35403208
Alignment:
| Q |
56 |
aaagcataggaagcatgattttgaagtgtgtttggataataacaacttccaccaggttgaataggaccgcaatcagcaccagctccacatgcataattta |
155 |
Q |
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|||||||| ||||||||| |||||||||||||||||| | | || ||||||||||| |||||||| || |||||||| ||| | |||||||||||||| |
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| T |
35403103 |
aaagcatatgaagcatgactttgaagtgtgtttggattaaagcagcttccaccaggctgaataggtccacaatcagctccatttgaacatgcataattta |
35403202 |
T |
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| Q |
156 |
aagcat |
161 |
Q |
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|||||| |
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| T |
35403203 |
aagcat |
35403208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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