View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14993_low_1 (Length: 451)
Name: NF14993_low_1
Description: NF14993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14993_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 9 - 223
Target Start/End: Complemental strand, 43584641 - 43584431
Alignment:
| Q |
9 |
gaaaagaagaggtaagaatatacagcttaggtctaaaccatagggtcaggcttttcaatcaattaaagtaatattatatattggtctcatattcttagtg |
108 |
Q |
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| T |
43584641 |
gaaaagaagaggtaagaatatacagcttaggtctaaaccatagggtcaggcttttcaatcaattaaagtaatattatatattggtctcatattcttagtg |
43584542 |
T |
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| Q |
109 |
catgattggttatgtgatagcaaaaattgatttctactaaatttattcggtaaaattgattttatttaataatgaattgattataaaataatgatttagg |
208 |
Q |
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| T |
43584541 |
catgattggttatgtgatagcaaaaattgatttctactaaatttatttagtaaaattgatttta-ttaataatgaattgattataa---aatgatttagg |
43584446 |
T |
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| Q |
209 |
tttgaatatatttgc |
223 |
Q |
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| T |
43584445 |
tttgaatatatttgc |
43584431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 304 - 433
Target Start/End: Complemental strand, 43584356 - 43584227
Alignment:
| Q |
304 |
tcaaacctatcaaaatcaattttatagatacatacaaaagtaatcctgaatgctccaaacacagacttcatcataaacaatgacaaacaagtttgtcaat |
403 |
Q |
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| T |
43584356 |
tcaaatctatcaaaatcaattttatagatacatacaaaagtaatcctgaatgctccaaacacatacttcatcataaacaatgacaaacaagtttgtcaat |
43584257 |
T |
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| Q |
404 |
tcaatcttgactgctccaaacacaggcttc |
433 |
Q |
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| T |
43584256 |
tcaatcttgactgctccaaacacaggcttc |
43584227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 345 - 409
Target Start/End: Complemental strand, 43584254 - 43584190
Alignment:
| Q |
345 |
aatcctgaatgctccaaacacagacttcatcataaacaatgacaaacaagtttgtcaattcaatc |
409 |
Q |
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| T |
43584254 |
aatcttgactgctccaaacacaggcttcatcataaacaatgacaaacaaatttgtcaactcaatc |
43584190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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