View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14993_low_4 (Length: 361)
Name: NF14993_low_4
Description: NF14993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14993_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 259; Significance: 1e-144; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 30 - 344
Target Start/End: Original strand, 11928700 - 11929014
Alignment:
| Q |
30 |
ttctcttaccaatcttgatttctctaacaatatgttgacatcatcaacttttcaattattgtcaaatcttagtcttgatcttcaagagcttaatctttct |
129 |
Q |
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||||| ||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
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| T |
11928700 |
ttctcctaccatccttgatttttctaacaatatgttgacattatcaacttttcaattattgtcaaatcttagtcttaatcttcaagagcttcatctttct |
11928799 |
T |
|
| Q |
130 |
caaaacaatattgttttgtcatctcaagtctatccaaacattccttctcttgtcatccttgacctctcacacaataatctaacatcattccaatttattg |
229 |
Q |
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|||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11928800 |
caaaacaatattgttttgtcatctcatgtgtatccaaacattccttctcttgtcatccttgacctctcacacaataatctaacatcattccaatttattg |
11928899 |
T |
|
| Q |
230 |
gtaacctcaactttagcaccaaattgcaagagctttatctaacaaattgcagtcttacagataaaagttttcttgtgtcatctacttccactttcaaatc |
329 |
Q |
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||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
11928900 |
gtaacctaacctttagcaccaaattgcaagagctttatctaacaagttgcagtcttacaaataaaagttttcttgtgtcatctacttccactttcaaatt |
11928999 |
T |
|
| Q |
330 |
tttatcttcccttct |
344 |
Q |
| |
|
||||||||||||||| |
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| T |
11929000 |
tttatcttcccttct |
11929014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 14 - 317
Target Start/End: Complemental strand, 11852571 - 11852268
Alignment:
| Q |
14 |
attctaacttttcctattctcttaccaatcttgatttctctaacaatatgttgacatcatcaacttttcaattattgtcaaatcttagtcttgatcttca |
113 |
Q |
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|||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||| |||||||||| ||||||||| |||||||| ||||||| |
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| T |
11852571 |
attctaacttttccaattctcttaccatccttgatttctctgccaatatgttgacatcatcagcttttcaattcttgtcaaatattagtcttaatcttca |
11852472 |
T |
|
| Q |
114 |
agagcttaatctttctcaaaacaatattgttttgtcatctcaagtctatccaaacattccttctcttgtcatccttgacctctcacacaataatctaaca |
213 |
Q |
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||||||| |||||||| ||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| | |||||| | || |
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| T |
11852471 |
agagcttcatctttctggaaacaatgttgttttgtcatctcatttctatccaaactttccttctcttgtcatccttgacctctcaaataataatatttca |
11852372 |
T |
|
| Q |
214 |
tcattccaatttattggtaacctcaactttagcaccaaattgcaagagctttatctaacaaattgcagtcttacagataaaagttttcttgtgtcatcta |
313 |
Q |
| |
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|||| ||||||| |||| || || |||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
11852371 |
tcatcccaatttccaggtatccgcagttttagctccaaattgcaagagcttcatctaacaaattgcatgcttacagataaaagttttcttgtgtcatcta |
11852272 |
T |
|
| Q |
314 |
cttc |
317 |
Q |
| |
|
|||| |
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|
| T |
11852271 |
cttc |
11852268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 14 - 317
Target Start/End: Original strand, 11962974 - 11963277
Alignment:
| Q |
14 |
attctaacttttcctattctcttaccaatcttgatttctctaacaatatgttgacatcatcaacttttcaattattgtcaaatcttagtcttgatcttca |
113 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||| |||||||||| ||||||||| |||||||| ||||||| |
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| T |
11962974 |
attctaacttttccaattctcttaccatccttgatttctcttccaatatgttgacatcatcagcttttcaattcttgtcaaatattagtcttaatcttca |
11963073 |
T |
|
| Q |
114 |
agagcttaatctttctcaaaacaatattgttttgtcatctcaagtctatccaaacattccttctcttgtcatccttgacctctcacacaataatctaaca |
213 |
Q |
| |
|
||||||| |||||||| |||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| | |||||| | || |
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| T |
11963074 |
agagcttgatctttctgaaaacaatgttgttttgtcatctcatttctatccaaactttccttctcttgtcatccttgacctctcatataataatatttca |
11963173 |
T |
|
| Q |
214 |
tcattccaatttattggtaacctcaactttagcaccaaattgcaagagctttatctaacaaattgcagtcttacagataaaagttttcttgtgtcatcta |
313 |
Q |
| |
|
|||| ||||||| |||| || || |||||| | ||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||| | |
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| T |
11963174 |
tcatcccaatttccaggtatccgcagttttagctcgaaattgcaaaagctttatctaacaagttgcatgcttacagataaaagttttcttgtgtcatcca |
11963273 |
T |
|
| Q |
314 |
cttc |
317 |
Q |
| |
|
|||| |
|
|
| T |
11963274 |
cttc |
11963277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 14 - 317
Target Start/End: Complemental strand, 11833307 - 11833004
Alignment:
| Q |
14 |
attctaacttttcctattctcttaccaatcttgatttctctaacaatatgttgacatcatcaacttttcaattattgtcaaatcttagtcttgatcttca |
113 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||| |
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| T |
11833307 |
attctaacttttccaattctcttaccatccttgatttctctgacaatatgttgacatcatcaacttttcaattcttgtcaaatattagtcttaatcttca |
11833208 |
T |
|
| Q |
114 |
agagcttaatctttctcaaaacaatattgttttgtcatctcaagtctatccaaacattccttctcttgtcatccttgacctctcacacaataatctaaca |
213 |
Q |
| |
|
||||||| ||||||| ||||||| |||||| | ||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||| | || |
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|
| T |
11833207 |
agagcttcgtctttctggaaacaatgttgtttggccatctcatttctatccaaactttccttctcttgtcatccttgacctctcaactaataatatttca |
11833108 |
T |
|
| Q |
214 |
tcattccaatttattggtaacctcaactttagcaccaaattgcaagagctttatctaacaaattgcagtcttacagataaaagttttcttgtgtcatcta |
313 |
Q |
| |
|
|||| ||||||| |||| || || |||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
11833107 |
tcatcccaatttccaggtatccgcagttttagctccaaattgcaagagctttatctagaaaattgcatgcttacagataaaagttttcttgtgtcatcta |
11833008 |
T |
|
| Q |
314 |
cttc |
317 |
Q |
| |
|
|||| |
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|
| T |
11833007 |
cttc |
11833004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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