View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14993_low_5 (Length: 275)
Name: NF14993_low_5
Description: NF14993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14993_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 48572919 - 48572680
Alignment:
| Q |
1 |
tggaggaaagaaaggtggtggtggagggaataatcagaatcaaggtggaggtaacaaaaataatggtggcatgccagaagctaaaaacggtggtggtggt |
100 |
Q |
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| T |
48572919 |
tggaggaaagaaaggtggtggtggagggaataatcagaatcaagttggaggtaacaaaaataatggtggcatgccagaagctaaaaacggtggtggtggt |
48572820 |
T |
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| Q |
101 |
ggaaacaagaacggagggaataatagtaataatcaaaataacgatgggggtaagaagggtatgtcgataccaattgttggcggaggtggaggtggtggtg |
200 |
Q |
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| T |
48572819 |
ggaaacaagaacggagggaataatagtaataatcaaaataacgatgggggtaagaagggtatgtcgataccagttgct------------ggtggtggtg |
48572732 |
T |
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| Q |
201 |
gtaatgttcaagctatgaacaatggatttcataaaatgatgggtggtggagg |
252 |
Q |
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| T |
48572731 |
gtaatgttcaagctatgaacaatggatttcataaaatgatgggtggtggagg |
48572680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 14 - 252
Target Start/End: Complemental strand, 48538582 - 48538353
Alignment:
| Q |
14 |
ggtggtggtggagggaataatcagaatcaaggtggaggtaacaaaaataatggtggcatgccagaagctaaaaacggtggtggtggtggaaacaagaacg |
113 |
Q |
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| T |
48538582 |
ggtggtggtggaggaaataatcagaatcatggtggaggtaacaaaaatagtggtggtttgcaggaggctaaaaatggtggtggtggaggaaacaagaatg |
48538483 |
T |
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| Q |
114 |
gaggga---ataatagtaataatcaaaataacgatgggggtaagaagggtatgtcgataccaattgttggcggaggtggaggtggtggtggtaatgttca |
210 |
Q |
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| T |
48538482 |
gagggaatcataatagtaataatcaaaataacaatgggggtaaaaagggtatgtcgataccagttgct------------ggtggtggtggtaatgttca |
48538395 |
T |
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| Q |
211 |
agctatgaacaatggatttcataaaatgatgggtggtggagg |
252 |
Q |
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| T |
48538394 |
agctatgaacaatggatttcaaaaaatgatgggtggcggagg |
48538353 |
T |
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