View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14993_low_8 (Length: 220)

Name: NF14993_low_8
Description: NF14993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14993_low_8
NF14993_low_8
[»] chr6 (21 HSPs)
chr6 (9-205)||(14017104-14017300)
chr6 (9-205)||(14027092-14027288)
chr6 (38-205)||(13943024-13943191)
chr6 (9-202)||(14112500-14112693)
chr6 (33-205)||(13470776-13470948)
chr6 (38-205)||(13860870-13861037)
chr6 (38-204)||(14086645-14086811)
chr6 (10-205)||(13890860-13891052)
chr6 (10-118)||(14027021-14027129)
chr6 (9-195)||(13873002-13873188)
chr6 (9-110)||(13873159-13873260)
chr6 (10-110)||(13873231-13873331)
chr6 (38-118)||(13471007-13471087)
chr6 (38-118)||(14112457-14112537)
chr6 (38-118)||(14017058-14017141)
chr6 (9-54)||(13470999-13471044)
chr6 (9-49)||(13860954-13860994)
chr6 (82-118)||(13873295-13873331)
chr6 (9-49)||(14086688-14086728)
chr6 (9-46)||(13470863-13470900)
chr6 (9-46)||(13943067-13943104)


Alignment Details
Target: chr6 (Bit Score: 169; Significance: 8e-91; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 9 - 205
Target Start/End: Original strand, 14017104 - 14017300
Alignment:
Q  9 tgagatgaagaaattgcaagttggagagatttccaagttgagatggaatgcttccttccaaataattgttgctgagatcaagaaattgcaagttggagag 108  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| || ||||||||||||||||||||||||||||    
T  14017104 tgagatcaagaaattgcaagttggagagatttccaagttgagatggaatgcttccatccaaatcattggtgttgagatcaagaaattgcaagttggagag 14017203  T
Q  109 atctccaagtcgttgaggaatcacaccatctagatgattgttggaaagattcaagtatttcaaatgtgaaagagactccaattgaataggaatttgt 205  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  14017204 atctccaagtcgatgaggaatcacaccatctagatgattgttggaaagatccaagtatttcaaatgtgaaagagactccaattgaataggaatttgt 14017300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 9 - 205
Target Start/End: Original strand, 14027092 - 14027288
Alignment:
Q  9 tgagatgaagaaattgcaagttggagagatttccaagttgagatggaatgcttccttccaaataattgttgctgagatcaagaaattgcaagttggagag 108  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  14027092 tgagatcaagaaattgcaagttggagagatttccaagttgacatggaatgcttccttccaaataattgtggctgagatcaagaaattgcaagttggagag 14027191  T
Q  109 atctccaagtcgttgaggaatcacaccatctagatgattgttggaaagattcaagtatttcaaatgtgaaagagactccaattgaataggaatttgt 205  Q
    | |||||||| | |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14027192 acctccaagttgatgaggaatcaaaccatctagaagattgttggaaagattcaagtatttcaaatgtgaaagagactccaattgaataggaatttgt 14027288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 38 - 205
Target Start/End: Original strand, 13943024 - 13943191
Alignment:
Q  38 tttccaagttgagatggaatgcttccttccaaataattgttgctgagatcaagaaattgcaagttggagagatctccaagtcgttgaggaatcacaccat 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  13943024 tttccaagttgagatggaatgcttccttccaaataattgttgctgagatcaagaaattgcaagttggagagatctccaagtcgatgaggaatcaaaccat 13943123  T
Q  138 ctagatgattgttggaaagattcaagtatttcaaatgtgaaagagactccaattgaataggaatttgt 205  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13943124 ctagaagattgtaggaaagattcaagtatttcaaatgtgaaagagactccaattgaataggaatttgt 13943191  T

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Target: chr6; HSP #4
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 9 - 202
Target Start/End: Original strand, 14112500 - 14112693
Alignment:
Q  9 tgagatgaagaaattgcaagttggagagatttccaagttgagatggaatgcttccttccaaataattgttgctgagatcaagaaattgcaagttggagag 108  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||| ||| ||||||||||||||||||||||||||||    
T  14112500 tgagatcaagaaattgcaagttggaaagatttccaagttgagatggaatgcttccttccaaaccattattgttgagatcaagaaattgcaagttggagag 14112599  T
Q  109 atctccaagtcgttgaggaatcacaccatctagatgattgttggaaagattcaagtatttcaaatgtgaaagagactccaattgaataggaatt 202  Q
    |||||||||||| | ||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||| ||||| |||||||||||    
T  14112600 atctccaagtcgattaggaatcacaccatctagacgattgttggaaagatttatgtatttcaaatgtgaaagagaccccaatggaataggaatt 14112693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 33 - 205
Target Start/End: Complemental strand, 13470948 - 13470776
Alignment:
Q  33 agagatttccaagttgagatggaatgcttccttccaaataattgttgctgagatcaagaaattgcaagttggagagatctccaagtcgttgaggaatcac 132  Q
    |||||||||||||||||| |||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||    
T  13470948 agagatttccaagttgagttggaatgcttccttccaaacgattgttcctgagatcaagaaattgcaagttggagagatctccaagtcgatgaggaataac 13470849  T
Q  133 accatctagatgattgttggaaagattcaagtatttcaaatgtgaaagagactccaattgaataggaatttgt 205  Q
    |||||||||| | ||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  13470848 accatctagacggttgtttgaaagattcaagtatttcaaatgagaaagagactcgaattgaataggaatttgt 13470776  T

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Target: chr6; HSP #6
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 38 - 205
Target Start/End: Complemental strand, 13861037 - 13860870
Alignment:
Q  38 tttccaagttgagatggaatgcttccttccaaataattgttgctgagatcaagaaattgcaagttggagagatctccaagtcgttgaggaatcacaccat 137  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||    
T  13861037 tttccaagttgagatggaatgcttccttccaaaaaattgtagctgagatcaagaaattgcaagttggagagatctccaagttgatgaggaatcaaaccat 13860938  T
Q  138 ctagatgattgttggaaagattcaagtatttcaaatgtgaaagagactccaattgaataggaatttgt 205  Q
    ||||||||||    ||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||    
T  13860937 ctagatgattccacgaaagattcaagtatttcaaatgcgaaagagactcaaattgaatatgaatttgt 13860870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 38 - 204
Target Start/End: Original strand, 14086645 - 14086811
Alignment:
Q  38 tttccaagttgagatggaatgcttccttccaaataattgttgctgagatcaagaaattgcaagttggagagatctccaagtcgttgaggaatcacaccat 137  Q
    |||||||||||| ||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||    
T  14086645 tttccaagttgatatggaatacttccttccaagtcattgttgctgagatcaagaaattgcaagttggagagatctccaagttgatgaggaatcaaaccat 14086744  T
Q  138 ctagatgattgttggaaagattcaagtatttcaaatgtgaaagagactccaattgaataggaatttg 204  Q
    |||||| |||    |||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  14086745 ctagataattccatgaaagattcaagtatttcaaatgcaaaagagactccaattgaataggaatttg 14086811  T

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Target: chr6; HSP #8
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 10 - 205
Target Start/End: Complemental strand, 13891052 - 13890860
Alignment:
Q  10 gagatgaagaaattgcaagttggagagatttccaagttgagatggaatgcttccttccaaataattgttgctgagatcaagaaattgcaagttggagaga 109  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||  ||| |||||||||||||||||||||||||||    
T  13891052 gagatcaagaaattgcaagttggagagatttccaagttgagatggaatgcttccttccaaaagattgcggctaagatcaagaaattgcaagttggagaga 13890953  T
Q  110 tctccaagtcgttgaggaatcacaccatctagatgattgttggaaagattcaagtatttcaaatgtgaaagagactccaattgaataggaatttgt 205  Q
    | |||||   |||||||||||| |||||| |||| ||||  |||||  |||||||||||||||||  |||| ||||| ||||||||||||||||||    
T  13890952 tttccaa---gttgaggaatcaaaccatccagatcattgccggaaattttcaagtatttcaaatggtaaagtgactcaaattgaataggaatttgt 13890860  T

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Target: chr6; HSP #9
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 10 - 118
Target Start/End: Original strand, 14027021 - 14027129
Alignment:
Q  10 gagatgaagaaattgcaagttggagagatttccaagttgagatggaatgcttccttccaaataattgttgctgagatcaagaaattgcaagttggagaga 109  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  14027021 gagatcaagaaattgcaagttggagagatttccaagttgagatggaatgcttccttccaaataattgatgctgagatcaagaaattgcaagttggagaga 14027120  T
Q  110 tctccaagt 118  Q
    | |||||||    
T  14027121 tttccaagt 14027129  T

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Target: chr6; HSP #10
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 9 - 195
Target Start/End: Complemental strand, 13873188 - 13873002
Alignment:
Q  9 tgagatgaagaaattgcaagttggagagatttccaagttgagatggaatgcttccttccaaataattgttgctgagatcaagaaattgcaagttggagag 108  Q
    |||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||| |||| ||||||||| ||||||| |||| | |  ||||||||    
T  13873188 tgagatcaagaaattgcaagttggagagatttccgagtttagatggaatgcttccttctaaatgattgttgcttagatcaataaatcgaacattggagag 13873089  T
Q  109 atctccaagtcgttgaggaatcacaccatctagatgattgttggaaagattcaagtatttcaaatgtgaaagagactccaattgaat 195  Q
    || ||||||| | |||||||||| |||||| |||| |||   ||||||| |||| ||||||||||| | ||||||||| ||||||||    
T  13873088 atttccaagttgatgaggaatcaaaccatcgagatcattcgaggaaagactcaaatatttcaaatgcggaagagactcaaattgaat 13873002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 9 - 110
Target Start/End: Complemental strand, 13873260 - 13873159
Alignment:
Q  9 tgagatgaagaaattgcaagttggagagatttccaagttgagatggaatgcttccttccaaataattgttgctgagatcaagaaattgcaagttggagag 108  Q
    ||||||||||||||| |||||||||||||||| ||||||| ||||| |||||||||||||||  ||||| ||||||||||||||||||||||||||||||    
T  13873260 tgagatgaagaaatttcaagttggagagattttcaagttgggatggtatgcttccttccaaacgattgtagctgagatcaagaaattgcaagttggagag 13873161  T
Q  109 at 110  Q
    ||    
T  13873160 at 13873159  T

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Target: chr6; HSP #12
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 10 - 110
Target Start/End: Complemental strand, 13873331 - 13873231
Alignment:
Q  10 gagatgaagaaattgcaagttggagagatttccaagttgagatggaatgcttccttccaaataattgttgctgagatcaagaaattgcaagttggagaga 109  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||  |||||| |||||||| |||||||||||||    
T  13873331 gagatcaagaaattgcaagttggagagatttccaagttgggatggaatccttccttccaaatcattgtttttgagatgaagaaatttcaagttggagaga 13873232  T
Q  110 t 110  Q
    |    
T  13873231 t 13873231  T

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Target: chr6; HSP #13
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 38 - 118
Target Start/End: Complemental strand, 13471087 - 13471007
Alignment:
Q  38 tttccaagttgagatggaatgcttccttccaaataattgttgctgagatcaagaaattgcaagttggagagatctccaagt 118  Q
    ||||||||||||||||||||  |||||||||||| ||| | |||||||||||||||||||||||||||||||| |||||||    
T  13471087 tttccaagttgagatggaatatttccttccaaattattatagctgagatcaagaaattgcaagttggagagatttccaagt 13471007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 38 - 118
Target Start/End: Original strand, 14112457 - 14112537
Alignment:
Q  38 tttccaagttgagatggaatgcttccttccaaataattgttgctgagatcaagaaattgcaagttggagagatctccaagt 118  Q
    ||||||| ||||||||||||||||||||| |||  |||| |||||||||||||||||||||||||||| |||| |||||||    
T  14112457 tttccaatttgagatggaatgcttccttcaaaaccattgatgctgagatcaagaaattgcaagttggaaagatttccaagt 14112537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 38 - 118
Target Start/End: Original strand, 14017058 - 14017141
Alignment:
Q  38 tttccaagttgagatggaatgcttccttccaaataa---ttgttgctgagatcaagaaattgcaagttggagagatctccaagt 118  Q
    |||||||||||||||||||| ||||||||||||  |   |||| |||||||||||||||||||||||||||||||| |||||||    
T  14017058 tttccaagttgagatggaattcttccttccaaaccaatgttgtggctgagatcaagaaattgcaagttggagagatttccaagt 14017141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 13471044 - 13470999
Alignment:
Q  9 tgagatgaagaaattgcaagttggagagatttccaagttgagatgg 54  Q
    |||||| |||||||||||||||||||||||||||||||||||||||    
T  13471044 tgagatcaagaaattgcaagttggagagatttccaagttgagatgg 13470999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 13860994 - 13860954
Alignment:
Q  9 tgagatgaagaaattgcaagttggagagatttccaagttga 49  Q
    |||||| ||||||||||||||||||||||| ||||||||||    
T  13860994 tgagatcaagaaattgcaagttggagagatctccaagttga 13860954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 118
Target Start/End: Complemental strand, 13873331 - 13873295
Alignment:
Q  82 gagatcaagaaattgcaagttggagagatctccaagt 118  Q
    ||||||||||||||||||||||||||||| |||||||    
T  13873331 gagatcaagaaattgcaagttggagagatttccaagt 13873295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 14086688 - 14086728
Alignment:
Q  9 tgagatgaagaaattgcaagttggagagatttccaagttga 49  Q
    |||||| ||||||||||||||||||||||| ||||||||||    
T  14086688 tgagatcaagaaattgcaagttggagagatctccaagttga 14086728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 13470900 - 13470863
Alignment:
Q  9 tgagatgaagaaattgcaagttggagagatttccaagt 46  Q
    |||||| ||||||||||||||||||||||| |||||||    
T  13470900 tgagatcaagaaattgcaagttggagagatctccaagt 13470863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 13943067 - 13943104
Alignment:
Q  9 tgagatgaagaaattgcaagttggagagatttccaagt 46  Q
    |||||| ||||||||||||||||||||||| |||||||    
T  13943067 tgagatcaagaaattgcaagttggagagatctccaagt 13943104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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