View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14994_high_3 (Length: 479)

Name: NF14994_high_3
Description: NF14994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14994_high_3
NF14994_high_3
[»] chr6 (16 HSPs)
chr6 (366-466)||(19548023-19548124)
chr6 (366-466)||(28584812-28584912)
chr6 (379-464)||(14980774-14980858)
chr6 (416-464)||(14745262-14745311)
chr6 (416-464)||(22396766-22396815)
chr6 (377-460)||(31473658-31473740)
chr6 (416-450)||(7848070-7848104)
chr6 (419-464)||(31494902-31494948)
chr6 (419-464)||(31500288-31500334)
chr6 (370-415)||(19547990-19548035)
chr6 (416-463)||(27122154-27122202)
chr6 (422-464)||(31514797-31514840)
chr6 (422-464)||(9190594-9190635)
chr6 (416-464)||(10641846-10641894)
chr6 (377-405)||(31494825-31494853)
chr6 (377-405)||(31500211-31500239)
[»] chr4 (12 HSPs)
chr4 (366-466)||(18557598-18557699)
chr4 (366-447)||(3576577-3576658)
chr4 (379-464)||(17418283-17418368)
chr4 (379-464)||(19728745-19728830)
chr4 (369-442)||(17335266-17335339)
chr4 (416-450)||(6821045-6821079)
chr4 (370-415)||(18557565-18557610)
chr4 (417-452)||(34635926-34635961)
chr4 (98-152)||(5277885-5277939)
chr4 (379-464)||(16285528-16285611)
chr4 (370-415)||(3576544-3576589)
chr4 (377-406)||(6821124-6821153)
[»] chr2 (9 HSPs)
chr2 (366-475)||(18988082-18988191)
chr2 (374-460)||(22521395-22521484)
chr2 (414-464)||(23247569-23247621)
chr2 (381-464)||(23907446-23907529)
chr2 (420-464)||(35922772-35922817)
chr2 (415-464)||(16858360-16858409)
chr2 (369-415)||(18988048-18988094)
chr2 (377-406)||(35922694-35922723)
chr2 (416-464)||(27470650-27470698)
[»] scaffold0290 (2 HSPs)
scaffold0290 (366-466)||(14777-14877)
scaffold0290 (369-415)||(14743-14789)
[»] scaffold0094 (2 HSPs)
scaffold0094 (366-466)||(5373-5474)
scaffold0094 (370-415)||(5340-5385)
[»] chr5 (4 HSPs)
chr5 (370-466)||(22486003-22486099)
chr5 (382-466)||(14208697-14208781)
chr5 (379-464)||(24832471-24832555)
chr5 (416-466)||(13935331-13935381)
[»] chr3 (6 HSPs)
chr3 (366-466)||(27871201-27871301)
chr3 (379-464)||(4713308-4713392)
chr3 (379-443)||(14482056-14482119)
chr3 (379-464)||(14055536-14055620)
chr3 (379-464)||(16614029-16614113)
chr3 (416-466)||(33499883-33499933)
[»] chr8 (4 HSPs)
chr8 (390-466)||(14422098-14422174)
chr8 (379-464)||(17862544-17862629)
chr8 (379-464)||(23658102-23658186)
chr8 (366-411)||(14420797-14420842)
[»] scaffold1043 (1 HSPs)
scaffold1043 (378-464)||(1724-1810)
[»] scaffold0010 (1 HSPs)
scaffold0010 (379-464)||(141916-142001)
[»] chr7 (11 HSPs)
chr7 (379-464)||(16074791-16074876)
chr7 (369-447)||(7067969-7068048)
chr7 (379-442)||(16060060-16060122)
chr7 (379-465)||(48376315-48376400)
chr7 (416-464)||(3089581-3089630)
chr7 (381-458)||(11252071-11252148)
chr7 (381-458)||(11254575-11254652)
chr7 (381-458)||(11257080-11257157)
chr7 (381-458)||(11259586-11259663)
chr7 (416-464)||(11655066-11655114)
chr7 (416-464)||(20025525-20025573)
[»] scaffold0170 (1 HSPs)
scaffold0170 (381-464)||(16908-16991)
[»] scaffold0239 (1 HSPs)
scaffold0239 (379-461)||(21650-21731)
[»] scaffold0061 (1 HSPs)
scaffold0061 (414-464)||(18448-18499)
[»] scaffold0063 (1 HSPs)
scaffold0063 (379-464)||(28770-28854)
[»] chr1 (3 HSPs)
chr1 (379-464)||(13882778-13882862)
chr1 (379-443)||(51659167-51659230)
chr1 (416-466)||(43155442-43155492)
[»] scaffold0218 (1 HSPs)
scaffold0218 (379-464)||(13901-13985)
[»] scaffold0003 (1 HSPs)
scaffold0003 (379-464)||(130312-130396)
[»] scaffold1001 (1 HSPs)
scaffold1001 (416-464)||(981-1029)


Alignment Details
Target: chr6 (Bit Score: 86; Significance: 6e-41; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 366 - 466
Target Start/End: Original strand, 19548023 - 19548124
Alignment:
Q  366 aatttggtgatgaaaagtccagtaacatatctctggcaacttggtgatgataggtgtggtaccacattcatataggtcttagg-atgagtccatatgcat 464  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  19548023 aatttgatgatgaaaagtccagtaacatatctctggcaacttggtgatgataggtatggtaccacattcatataggtcttaggaatgagtccatatgcat 19548122  T
Q  465 tt 466  Q
    ||    
T  19548123 tt 19548124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 366 - 466
Target Start/End: Original strand, 28584812 - 28584912
Alignment:
Q  366 aatttggtgatgaaaagtccagtaacatatctctggcaacttggtgatgataggtgtggtaccacattcatataggtcttaggatgagtccatatgcatt 465  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||    
T  28584812 aatttggtgttgaaaagtccagtaacatatctctggcaacttggtgatgataggtgtcgtaccacattcatataggtcttagaaagagtccatatgcatt 28584911  T
Q  466 t 466  Q
    |    
T  28584912 t 28584912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 379 - 464
Target Start/End: Original strand, 14980774 - 14980858
Alignment:
Q  379 aaagtccagtaacatatctctggcaacttggtgatgataggtgtggtaccacattcatataggtc-ttaggatgagtccatatgcat 464  Q
    |||||||||||||||| ||||||||| ||  ||| |||||||||||||||||| ||||||||||| |||||| ||||||||||||||    
T  14980774 aaagtccagtaacatacctctggcaaatta-tgacgataggtgtggtaccacaatcatataggtcattagga-gagtccatatgcat 14980858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 416 - 464
Target Start/End: Complemental strand, 14745311 - 14745262
Alignment:
Q  416 taggtgtggtaccacattcatataggtcttagga-tgagtccatatgcat 464  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  14745311 taggtgtggtaccacattcatataggtcttaggactgagtccatatgcat 14745262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 416 - 464
Target Start/End: Original strand, 22396766 - 22396815
Alignment:
Q  416 taggtgtggtaccacattcatataggtcttagga-tgagtccatatgcat 464  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||||    
T  22396766 taggtgtggtaccacattcatataggtcttaggactaagtccatatgcat 22396815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 377 - 460
Target Start/End: Original strand, 31473658 - 31473740
Alignment:
Q  377 gaaaagtccagtaacatatctctggcaacttggtgatgataggtgtggtaccacattcatataggtcttagga-tgagtccatat 460  Q
    |||||||||||||| ||| |||||||||  || |||   || ||||||||||||||||||||||||||||||| |||||||||||    
T  31473658 gaaaagtccagtaatataactctggcaaaatgatgag--taagtgtggtaccacattcatataggtcttaggactgagtccatat 31473740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 416 - 450
Target Start/End: Complemental strand, 7848104 - 7848070
Alignment:
Q  416 taggtgtggtaccacattcatataggtcttaggat 450  Q
    |||||||||||||||||||||||||||||||||||    
T  7848104 taggtgtggtaccacattcatataggtcttaggat 7848070  T

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Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 419 - 464
Target Start/End: Original strand, 31494902 - 31494948
Alignment:
Q  419 gtgtggtaccacattcatataggtcttagga-tgagtccatatgcat 464  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||    
T  31494902 gtgtggtaccacattcatatagatcttaggactgagtccatatgcat 31494948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 419 - 464
Target Start/End: Original strand, 31500288 - 31500334
Alignment:
Q  419 gtgtggtaccacattcatataggtcttagga-tgagtccatatgcat 464  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||    
T  31500288 gtgtggtaccacattcatatagatcttaggactgagtccatatgcat 31500334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 370 - 415
Target Start/End: Original strand, 19547990 - 19548035
Alignment:
Q  370 tggtgatgaaaagtccagtaacatatctctggcaacttggtgatga 415  Q
    ||||||||||||||||||||| ||||||||||||| ||| ||||||    
T  19547990 tggtgatgaaaagtccagtaatatatctctggcaatttgatgatga 19548035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 416 - 463
Target Start/End: Original strand, 27122154 - 27122202
Alignment:
Q  416 taggtgtggtaccacattcatataggtcttagga-tgagtccatatgca 463  Q
    ||||| |||||||||||||||||||||||||||| ||||| ||||||||    
T  27122154 taggtatggtaccacattcatataggtcttaggactgagttcatatgca 27122202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 422 - 464
Target Start/End: Original strand, 31514797 - 31514840
Alignment:
Q  422 tggtaccacattcatataggtcttagga-tgagtccatatgcat 464  Q
    ||||||||||||||||||| |||||||| |||||||||||||||    
T  31514797 tggtaccacattcatatagatcttaggactgagtccatatgcat 31514840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 422 - 464
Target Start/End: Complemental strand, 9190635 - 9190594
Alignment:
Q  422 tggtaccacattcatataggtcttaggatgagtccatatgcat 464  Q
    |||||||||||||||||||||| ||||| ||||||||||||||    
T  9190635 tggtaccacattcatataggtcatagga-gagtccatatgcat 9190594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 464
Target Start/End: Original strand, 10641846 - 10641894
Alignment:
Q  416 taggtgtggtaccacattcatataggtc-ttaggatgagtccatatgcat 464  Q
    ||||||||||||||||||||||||||||  ||||| ||||||||||||||    
T  10641846 taggtgtggtaccacattcatataggtcgatagga-gagtccatatgcat 10641894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 405
Target Start/End: Original strand, 31494825 - 31494853
Alignment:
Q  377 gaaaagtccagtaacatatctctggcaac 405  Q
    |||||||||||||||||||||||||||||    
T  31494825 gaaaagtccagtaacatatctctggcaac 31494853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 405
Target Start/End: Original strand, 31500211 - 31500239
Alignment:
Q  377 gaaaagtccagtaacatatctctggcaac 405  Q
    |||||||||||||||||||||||||||||    
T  31500211 gaaaagtccagtaacatatctctggcaac 31500239  T

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Target: chr4 (Bit Score: 86; Significance: 6e-41; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 366 - 466
Target Start/End: Original strand, 18557598 - 18557699
Alignment:
Q  366 aatttggtgatgaaaagtccagtaacatatctctggcaacttggtgatgataggtgtggtaccacattcatataggtcttagg-atgagtccatatgcat 464  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  18557598 aatttgatgatgaaaagtccagtaacatatctctggcaacttggtgatgataggtatggtaccacattcatataggtcttaggaatgagtccatatgcat 18557697  T
Q  465 tt 466  Q
    ||    
T  18557698 tt 18557699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 366 - 447
Target Start/End: Original strand, 3576577 - 3576658
Alignment:
Q  366 aatttggtgatgaaaagtccagtaacatatctctggcaacttggtgatgataggtgtggtaccacattcatataggtcttag 447  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3576577 aatttggtgatgaaaagtccagtaacatatctctggcaacttggtgatgataggtgtggtaccacattcatataggtcttag 3576658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 379 - 464
Target Start/End: Complemental strand, 17418368 - 17418283
Alignment:
Q  379 aaagtccagtaacatatctctggcaacttggtgatgataggtgtggtaccacattcatataggtcttagga-tgagtccatatgcat 464  Q
    |||||| ||||||||| ||||||||| ||  ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  17418368 aaagtctagtaacatacctctggcaaatta-tgacgataggtgtggtaccacattcatataggtcttaggactgagtccatatgcat 17418283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 379 - 464
Target Start/End: Original strand, 19728745 - 19728830
Alignment:
Q  379 aaagtccagtaacatatctctggcaacttggtgatgataggtgtggtaccacattcatataggtcttagga-tgagtccatatgcat 464  Q
    |||||||||||||||| || |||||| ||  ||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  19728745 aaagtccagtaacatacctttggcaaatta-tgacgataggtgtggtaccacattcatataggtcttaggattgagtccacatgcat 19728830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 369 - 442
Target Start/End: Complemental strand, 17335339 - 17335266
Alignment:
Q  369 ttggtgatgaaaagtccagtaacatatctctggcaacttggtgatgataggtgtggtaccacattcatataggt 442  Q
    |||||| | |||||| ||| |||||||||||||||||||| || ||| ||||||||||||||||||||||||||    
T  17335339 ttggtgttcaaaagttcagaaacatatctctggcaacttgatgttgagaggtgtggtaccacattcatataggt 17335266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 416 - 450
Target Start/End: Complemental strand, 6821079 - 6821045
Alignment:
Q  416 taggtgtggtaccacattcatataggtcttaggat 450  Q
    |||||||||||||||||||||||||||||||||||    
T  6821079 taggtgtggtaccacattcatataggtcttaggat 6821045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 370 - 415
Target Start/End: Original strand, 18557565 - 18557610
Alignment:
Q  370 tggtgatgaaaagtccagtaacatatctctggcaacttggtgatga 415  Q
    ||||||||||||||||||||| ||||||||||||| ||| ||||||    
T  18557565 tggtgatgaaaagtccagtaatatatctctggcaatttgatgatga 18557610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 452
Target Start/End: Original strand, 34635926 - 34635961
Alignment:
Q  417 aggtgtggtaccacattcatataggtcttaggatga 452  Q
    ||||||||||||||||| ||||||||||||||||||    
T  34635926 aggtgtggtaccacatttatataggtcttaggatga 34635961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 152
Target Start/End: Original strand, 5277885 - 5277939
Alignment:
Q  98 ttgaaaactcatctcacacctatagctttcttgttaggtgttaatgatactaact 152  Q
    |||||||||||||| ||| |||||||||||  |||||||| |||| |||||||||    
T  5277885 ttgaaaactcatcttacatctatagctttcaagttaggtgataataatactaact 5277939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 379 - 464
Target Start/End: Original strand, 16285528 - 16285611
Alignment:
Q  379 aaagtccagtaacatatctctggcaacttggtgatgataggtgtggtaccacattcatataggtcttaggatgagtccatatgcat 464  Q
    |||||||||||||||| |||||||||  ||  ||   ||||||||||||||||||||||||||||  | |  ||||||||||||||    
T  16285528 aaagtccagtaacataactctggcaaaatgacgag--taggtgtggtaccacattcatataggtcgaaaggagagtccatatgcat 16285611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 415
Target Start/End: Original strand, 3576544 - 3576589
Alignment:
Q  370 tggtgatgaaaagtccagtaacatatctctggcaacttggtgatga 415  Q
    ||||||||||||  ||| ||||||||||||||||| ||||||||||    
T  3576544 tggtgatgaaaaagccattaacatatctctggcaatttggtgatga 3576589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 406
Target Start/End: Complemental strand, 6821153 - 6821124
Alignment:
Q  377 gaaaagtccagtaacatatctctggcaact 406  Q
    ||||||||||||||||||||||||||||||    
T  6821153 gaaaagtccagtaacatatctctggcaact 6821124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 6e-41; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 366 - 475
Target Start/End: Original strand, 18988082 - 18988191
Alignment:
Q  366 aatttggtgatgaaaagtccagtaacatatctctggcaacttggtgatgataggtgtggtaccacattcatataggtcttaggatgagtccatatgcatt 465  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||    
T  18988082 aatttggtgatgaaaagtccagtaacatgtctctggcaactcggtgatgatagttgtggtaccacattcatataggtcttaggatgactccatatgcatt 18988181  T
Q  466 ttgatgatgt 475  Q
    |  |||||||    
T  18988182 taaatgatgt 18988191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 374 - 460
Target Start/End: Complemental strand, 22521484 - 22521395
Alignment:
Q  374 gatgaaaagtccagtaacatatctctggcaact--tggtgatgataggtgtggtaccacattcatataggtcttagga-tgagtccatat 460  Q
    ||||||||||||||||||||||||||||||| |  ||  ||||| ||| ||||||||||||||||| ||||||||||| |||||||||||    
T  22521484 gatgaaaagtccagtaacatatctctggcaaattatgacgatgaaaggcgtggtaccacattcataaaggtcttaggactgagtccatat 22521395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 414 - 464
Target Start/End: Original strand, 23247569 - 23247621
Alignment:
Q  414 gataggtgtggtaccacattcatataggtcttagga--tgagtccatatgcat 464  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  23247569 gataggtgtggtaccacattcatataggtcttaggaattgagtccatatgcat 23247621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 381 - 464
Target Start/End: Complemental strand, 23907529 - 23907446
Alignment:
Q  381 agtccagtaacatatctctggcaacttggtgatgataggtgtggtaccacattcatataggtcttagg-atgagtccatatgcat 464  Q
    |||| ||||||||| |||||| || ||  ||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  23907529 agtcgagtaacatacctctggaaaatta-tgacgataggtgtggtactacattcatataggtcttaggaatgagtccatatgcat 23907446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 420 - 464
Target Start/End: Original strand, 35922772 - 35922817
Alignment:
Q  420 tgtggtaccacattcatataggtcttagga-tgagtccatatgcat 464  Q
    |||||||||||||||||||||||||||||| |||||||||||||||    
T  35922772 tgtggtaccacattcatataggtcttaggactgagtccatatgcat 35922817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 415 - 464
Target Start/End: Complemental strand, 16858409 - 16858360
Alignment:
Q  415 ataggtgtggtaccacattcatataggtc-ttaggatgagtccatatgcat 464  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  16858409 ataggtgtggtaccacattcatataggtcgttagga-gagtccatatgcat 16858360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 369 - 415
Target Start/End: Original strand, 18988048 - 18988094
Alignment:
Q  369 ttggtgatgaaaagtccagtaacatatctctggcaacttggtgatga 415  Q
    |||||||||||||||||||||| |||| |||||||| ||||||||||    
T  18988048 ttggtgatgaaaagtccagtaatatatatctggcaatttggtgatga 18988094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 406
Target Start/End: Original strand, 35922694 - 35922723
Alignment:
Q  377 gaaaagtccagtaacatatctctggcaact 406  Q
    ||||||||||||||||||||||||||||||    
T  35922694 gaaaagtccagtaacatatctctggcaact 35922723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 416 - 464
Target Start/End: Original strand, 27470650 - 27470698
Alignment:
Q  416 taggtgtggtaccacattcatataggtcttaggatgagtccatatgcat 464  Q
    ||||||||||||||||||||||||| || | ||  ||||||||||||||    
T  27470650 taggtgtggtaccacattcatatagatcgttgggagagtccatatgcat 27470698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 85; Significance: 3e-40; HSPs: 2)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 366 - 466
Target Start/End: Original strand, 14777 - 14877
Alignment:
Q  366 aatttggtgatgaaaagtccagtaacatatctctggcaacttggtgatgataggtgtggtaccacattcatataggtcttaggatgagtccatatgcatt 465  Q
    ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  14777 aatttggtgatgaaaagtccagtaacatatctctggcaactcgatgatgataggtgtggtacaacattcatataggtcttaggatgagttcatatgcatt 14876  T
Q  466 t 466  Q
    |    
T  14877 t 14877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 369 - 415
Target Start/End: Original strand, 14743 - 14789
Alignment:
Q  369 ttggtgatgaaaagtccagtaacatatctctggcaacttggtgatga 415  Q
    |||||||||||||||||||||| |||| |||||||| ||||||||||    
T  14743 ttggtgatgaaaagtccagtaatatatatctggcaatttggtgatga 14789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 366 - 466
Target Start/End: Original strand, 5373 - 5474
Alignment:
Q  366 aatttggtgatgaaaagtccagtaacatatctctggcaacttggtgatgataggtgtggtaccacattcatataggtcttagg-atgagtccatatgcat 464  Q
    ||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  5373 aatttggtgatgaaaagtcaagtaacatatctctggaaacttagtgatgataggtgtggtaccacattcatataggtcttaggaatgagtccatatgcat 5472  T
Q  465 tt 466  Q
    ||    
T  5473 tt 5474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 370 - 415
Target Start/End: Original strand, 5340 - 5385
Alignment:
Q  370 tggtgatgaaaagtccagtaacatatctctggcaacttggtgatga 415  Q
    ||||||||||||||| ||||| ||||||||||||| ||||||||||    
T  5340 tggtgatgaaaagtctagtaatatatctctggcaatttggtgatga 5385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 6e-38; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 370 - 466
Target Start/End: Original strand, 22486003 - 22486099
Alignment:
Q  370 tggtgatgaaaagtccagtaacatatctctggcaacttggtgatgataggtgtggtaccacattcatataggtcttaggatgagtccatatgcattt 466  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||    
T  22486003 tggtgatgaaaagtccagtaacatttctctggcaacttggtgatgataggtgtggtaccactttcatataggtattaggaagagtccatatgcattt 22486099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 382 - 466
Target Start/End: Original strand, 14208697 - 14208781
Alignment:
Q  382 gtccagtaacatatctctggcaacttggtgatgataggtgtggtaccacattcatataggtcttaggatgagtccatatgcattt 466  Q
    ||||||||| ||| ||||| ||||||||||||||||||||||||||| |||||||| | |||||| || ||||| ||||||||||    
T  14208697 gtccagtaatatacctctgacaacttggtgatgataggtgtggtaccgcattcataaaagtcttatgaagagtctatatgcattt 14208781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 379 - 464
Target Start/End: Original strand, 24832471 - 24832555
Alignment:
Q  379 aaagtccagtaacatatctctggcaacttggtgatgataggtgtggtaccacattcatataggtc-ttaggatgagtccatatgcat 464  Q
    |||||||||||||||| |||||| || ||  ||| ||||||||||||||||||||||||||||||  ||||| ||||||||||||||    
T  24832471 aaagtccagtaacatacctctggaaaatta-tgacgataggtgtggtaccacattcatataggtcgatagga-gagtccatatgcat 24832555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 416 - 466
Target Start/End: Complemental strand, 13935381 - 13935331
Alignment:
Q  416 taggtgtggtaccacattcatataggtcttaggatgagtccatatgcattt 466  Q
    ||||||||||||||||||||||||| ||||| |||||  ||||||||||||    
T  13935381 taggtgtggtaccacattcatatagatcttacgatgaacccatatgcattt 13935331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 6e-38; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 366 - 466
Target Start/End: Original strand, 27871201 - 27871301
Alignment:
Q  366 aatttggtgatgaaaagtccagtaacatatctctggcaacttggtgatgataggtgtggtaccacattcatataggtcttaggatgagtccatatgcatt 465  Q
    |||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  27871201 aatttggtgatgaaaagtccagtaacatatttctggaaactcggtgatgataggtgtggtaccacattcatataggtcaaaggatgagtccatatgcatt 27871300  T
Q  466 t 466  Q
    |    
T  27871301 t 27871301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 379 - 464
Target Start/End: Original strand, 4713308 - 4713392
Alignment:
Q  379 aaagtccagtaacatatctctggcaacttggtgatgataggtgtggtaccacattcatataggtc-ttaggatgagtccatatgcat 464  Q
    |||||||||||||||| ||||||||| ||  ||| |||||||||||||||||| ||||||||||| |||||| ||||||||||||||    
T  4713308 aaagtccagtaacatacctctggcaaatta-tgacgataggtgtggtaccacaatcatataggtcattagga-gagtccatatgcat 4713392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 379 - 443
Target Start/End: Original strand, 14482056 - 14482119
Alignment:
Q  379 aaagtccagtaacatatctctggcaacttggtgatgataggtgtggtaccacattcatataggtc 443  Q
    ||||||||||||||||||||||| || ||  ||| ||||||||||||||||||||||||||||||    
T  14482056 aaagtccagtaacatatctctggaaaatta-tgacgataggtgtggtaccacattcatataggtc 14482119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 464
Target Start/End: Original strand, 14055536 - 14055620
Alignment:
Q  379 aaagtccagtaacatatctctggcaacttggtgatgataggtgtggtaccacattcatataggtc-ttaggatgagtccatatgcat 464  Q
    |||||||||||||||| ||| || |||||  ||| |||||||||||||||||| ||||||||||| |||||| ||||||||| ||||    
T  14055536 aaagtccagtaacatacctcaggaaactta-tgaagataggtgtggtaccacaatcatataggtcattagga-gagtccataggcat 14055620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 464
Target Start/End: Complemental strand, 16614113 - 16614029
Alignment:
Q  379 aaagtccagtaacatatctctggcaacttggtgatgataggtgtggtaccacattcatatagg-tcttaggatgagtccatatgcat 464  Q
    |||||| ||||||||| ||||||||| ||  ||| |||||||||||||||||| ||||||||| | |||||| ||||||||||||||    
T  16614113 aaagtctagtaacatacctctggcaaatta-tgacgataggtgtggtaccacaatcatataggttattagga-gagtccatatgcat 16614029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 416 - 466
Target Start/End: Original strand, 33499883 - 33499933
Alignment:
Q  416 taggtgtggtaccacattcatataggtcttaggatgagtccatatgcattt 466  Q
    |||||||| |||||| |||||||||||| || |||| ||||||||||||||    
T  33499883 taggtgtgctaccactttcatataggtcatatgatgggtccatatgcattt 33499933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 390 - 466
Target Start/End: Original strand, 14422098 - 14422174
Alignment:
Q  390 acatatctctggcaacttggtgatgataggtgtggtaccacattcatataggtcttaggatgagtccatatgcattt 466  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  14422098 acatatctctggcaacttagtgatgataggtgcggtaccacattcatataggtcttagggtgagtccatatgcattt 14422174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 379 - 464
Target Start/End: Original strand, 17862544 - 17862629
Alignment:
Q  379 aaagtccagtaacatatctctggcaacttggtgatgataggtgtggtaccacattcatataggtcttagga-tgagtccatatgcat 464  Q
    |||||||||||||||| || |||||| ||  ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  17862544 aaagtccagtaacatacctatggcaaatta-tgacgataggtgtggtaccacattcatataggtcttaggactgagtccatatgcat 17862629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 379 - 464
Target Start/End: Complemental strand, 23658186 - 23658102
Alignment:
Q  379 aaagtccagtaacatatctctggcaacttggtgatgataggtgtggtaccacattcatataggtc-ttaggatgagtccatatgcat 464  Q
    |||||||||||||||| ||||||||| ||  ||| |||||||||||||||||| ||||||||||| |||||| ||||||||||||||    
T  23658186 aaagtccagtaacatacctctggcaaatta-tgacgataggtgtggtaccacaatcatataggtcgttagga-gagtccatatgcat 23658102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 366 - 411
Target Start/End: Original strand, 14420797 - 14420842
Alignment:
Q  366 aatttggtgatgaaaagtccagtaacatatctctggcaacttggtg 411  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||    
T  14420797 aatttggtgttgaaaagtccagtaacatatctctggcaatttggtg 14420842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 378 - 464
Target Start/End: Original strand, 1724 - 1810
Alignment:
Q  378 aaaagtccagtaacatatctctggcaacttggtgatgataggtgtggtaccacattcatataggtcttagga-tgagtccatatgcat 464  Q
    ||||||||||||||||| ||||||||| ||  ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  1724 aaaagtccagtaacatacctctggcaaatta-tgacgataggtgtggtaccacattcatataggtcttaggactgagtccatatgcat 1810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 379 - 464
Target Start/End: Complemental strand, 142001 - 141916
Alignment:
Q  379 aaagtccagtaacatatctctggcaacttggtgatgataggtgtggtaccacattcatataggtcttagga-tgagtccatatgcat 464  Q
    |||||||||||||||| ||||||||| ||  ||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  142001 aaagtccagtaacatacctctggcaaatta-tgacgataggtgtggtaccacattcatataggtcttaggactgagtccatttgcat 141916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 379 - 464
Target Start/End: Original strand, 16074791 - 16074876
Alignment:
Q  379 aaagtccagtaacatatctctggcaacttggtgatgataggtgtggtaccacattcatataggtcttagga-tgagtccatatgcat 464  Q
    |||||||||||||||| ||||||||| ||  ||| || |||||||||||||||| |||||||||||||||| |||||||||||||||    
T  16074791 aaagtccagtaacatacctctggcaaatta-tgacgagaggtgtggtaccacatgcatataggtcttaggactgagtccatatgcat 16074876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 369 - 447
Target Start/End: Original strand, 7067969 - 7068048
Alignment:
Q  369 ttggtgatgaaaa-gtccagtaacatatctctggcaacttggtgatgataggtgtggtaccacattcatataggtcttag 447  Q
    ||||||||||||| ||||  ||||||| | ||| |||||||| |||||||||||||||||||| ||||||||||||||||    
T  7067969 ttggtgatgaaaaagtccgataacatacccctgacaacttggcgatgataggtgtggtaccacgttcatataggtcttag 7068048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 379 - 442
Target Start/End: Complemental strand, 16060122 - 16060060
Alignment:
Q  379 aaagtccagtaacatatctctggcaacttggtgatgataggtgtggtaccacattcatataggt 442  Q
    |||||||||||||||| ||||||||| ||  |||||||||||||||||| ||| ||||||||||    
T  16060122 aaagtccagtaacatacctctggcaaatta-tgatgataggtgtggtactacaatcatataggt 16060060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 465
Target Start/End: Complemental strand, 48376400 - 48376315
Alignment:
Q  379 aaagtccagtaacatatctctggcaacttggtgatgataggtgtggtaccacattcatataggtcttaggatgagtccatatgcatt 465  Q
    |||||| |||||||||  |||||||| ||  ||| |||||||||||||||||| ||||||||||| |  || |||||||||||||||    
T  48376400 aaagtcaagtaacatacttctggcaaatta-tgacgataggtgtggtaccacagtcatataggtcattagaagagtccatatgcatt 48376315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 416 - 464
Target Start/End: Original strand, 3089581 - 3089630
Alignment:
Q  416 taggtgtggtaccacattcatataggtcttagg-atgagtccatatgcat 464  Q
    ||||| |||||||||||||||||||||||||||  |||||||||||||||    
T  3089581 taggtctggtaccacattcatataggtcttaggtctgagtccatatgcat 3089630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 458
Target Start/End: Original strand, 11252071 - 11252148
Alignment:
Q  381 agtccagtaacatatctctggcaacttggtgatgataggtgtggtaccacattcatataggtcttaggatgagtccat 458  Q
    |||||||||||||| |||||||||  || ||| | |||| ||||| ||||||||||| | || ||||| |||||||||    
T  11252071 agtccagtaacataactctggcaaaatgatgaagttaggagtggtgccacattcatacatgttttagggtgagtccat 11252148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 458
Target Start/End: Original strand, 11254575 - 11254652
Alignment:
Q  381 agtccagtaacatatctctggcaacttggtgatgataggtgtggtaccacattcatataggtcttaggatgagtccat 458  Q
    |||||||||||||| |||||||||  || ||| | |||| ||||| ||||||||||| | || ||||| |||||||||    
T  11254575 agtccagtaacataactctggcaaaatgatgaagttaggagtggtgccacattcatacatgttttagggtgagtccat 11254652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 458
Target Start/End: Original strand, 11257080 - 11257157
Alignment:
Q  381 agtccagtaacatatctctggcaacttggtgatgataggtgtggtaccacattcatataggtcttaggatgagtccat 458  Q
    |||||||||||||| |||||||||  || ||| | |||| ||||| ||||||||||| | || ||||| |||||||||    
T  11257080 agtccagtaacataactctggcaaaatgatgaagttaggagtggtgccacattcatacatgttttagggtgagtccat 11257157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 458
Target Start/End: Original strand, 11259586 - 11259663
Alignment:
Q  381 agtccagtaacatatctctggcaacttggtgatgataggtgtggtaccacattcatataggtcttaggatgagtccat 458  Q
    |||||||||||||| |||||||||  || ||| | |||| ||||| ||||||||||| | || ||||| |||||||||    
T  11259586 agtccagtaacataactctggcaaaatgatgaagttaggagtggtgccacattcatacatgttttagggtgagtccat 11259663  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 464
Target Start/End: Complemental strand, 11655114 - 11655066
Alignment:
Q  416 taggtgtggtaccacattcatataggtc-ttaggatgagtccatatgcat 464  Q
    ||||||||||||||||||||||||||||  ||||| ||||||||||||||    
T  11655114 taggtgtggtaccacattcatataggtcgatagga-gagtccatatgcat 11655066  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 464
Target Start/End: Complemental strand, 20025573 - 20025525
Alignment:
Q  416 taggtgtggtaccacattcatataggtct-taggatgagtccatatgcat 464  Q
    |||||||||||||||||| |||||||||| ||||| ||||||||||||||    
T  20025573 taggtgtggtaccacattaatataggtctatagga-gagtccatatgcat 20025525  T

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Target: scaffold0170 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 381 - 464
Target Start/End: Complemental strand, 16991 - 16908
Alignment:
Q  381 agtccagtaacatatctctggcaacttggtgatgataggtgtggtaccacattcatataggtcttag-gatgagtccatatgcat 464  Q
    |||| ||||||||| |||||| || ||  ||| ||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  16991 agtcgagtaacatacctctggaaaatta-tgacgataggtgtggtaccacattcatataggtcttagaaatgagtccatatgcat 16908  T

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Target: scaffold0239 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0239
Description:

Target: scaffold0239; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 379 - 461
Target Start/End: Original strand, 21650 - 21731
Alignment:
Q  379 aaagtccagtaacatatctctggcaacttggtgatgataggtgtggtaccacattcatataggtctt-aggatgagtccatatg 461  Q
    |||||||||||||||| ||||||||| ||  ||| |||||||||||||||||| ||||||||||||| |||| |||||||||||    
T  21650 aaagtccagtaacatacctctggcaaatta-tgacgataggtgtggtaccacaatcatataggtctttagga-gagtccatatg 21731  T

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Target: scaffold0061 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 414 - 464
Target Start/End: Original strand, 18448 - 18499
Alignment:
Q  414 gataggtgtggtaccacattcatataggtcttagga-tgagtccatatgcat 464  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  18448 gataggtgtggtacgacattcatataggtcttaggactgagtccatatgcat 18499  T

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Target: scaffold0063 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 464
Target Start/End: Original strand, 28770 - 28854
Alignment:
Q  379 aaagtccagtaacatatctctggcaacttggtgatgataggtgtggtaccacattcatataggtc-ttaggatgagtccatatgcat 464  Q
    |||||||||||||||| |||||| || ||  ||| |||||||||||||||||| ||||| ||||| |||||| ||||||||||||||    
T  28770 aaagtccagtaacatacctctggaaaatta-tgacgataggtgtggtaccacaatcatagaggtcattagga-gagtccatatgcat 28854  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 464
Target Start/End: Original strand, 13882778 - 13882862
Alignment:
Q  379 aaagtccagtaacatatctctggcaacttggtgatgataggtgtggtaccacattcatatagg-tcttaggatgagtccatatgcat 464  Q
    |||||||||||||||| |||||| || ||  ||| |||||||||||||||||| ||||||||| | |||||| ||||||||||||||    
T  13882778 aaagtccagtaacatacctctggtaaatta-tgacgataggtgtggtaccacaatcatataggtttttagga-gagtccatatgcat 13882862  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 379 - 443
Target Start/End: Original strand, 51659167 - 51659230
Alignment:
Q  379 aaagtccagtaacatatctctggcaacttggtgatgataggtgtggtaccacattcatataggtc 443  Q
    |||||||||||||||| ||||| ||| ||  ||| |||||||||||||||||| |||||||||||    
T  51659167 aaagtccagtaacatacctctgacaaatta-tgacgataggtgtggtaccacaatcatataggtc 51659230  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 416 - 466
Target Start/End: Original strand, 43155442 - 43155492
Alignment:
Q  416 taggtgtggtaccacattcatataggtcttaggatgagtccatatgcattt 466  Q
    ||||||| || ||||||||||||||||| || |||| ||||||||||||||    
T  43155442 taggtgtagtgccacattcatataggtcataagatgggtccatatgcattt 43155492  T

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Target: scaffold0218 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 379 - 464
Target Start/End: Complemental strand, 13985 - 13901
Alignment:
Q  379 aaagtccagtaacatatctctggcaacttggtgatgataggtgtggtaccacattcatataggtc-ttaggatgagtccatatgcat 464  Q
    |||||||||||| ||| |||||| || ||  ||| |||||||||||||||||| ||||||| ||| |||||| ||||||||||||||    
T  13985 aaagtccagtaatatagctctggaaaatta-tgacgataggtgtggtaccacaatcatatacgtcattagga-gagtccatatgcat 13901  T

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Target: scaffold0003 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 379 - 464
Target Start/End: Complemental strand, 130396 - 130312
Alignment:
Q  379 aaagtccagtaacatatctctggcaacttggtgatgataggtgtggtaccacattcatataggtc-ttaggatgagtccatatgcat 464  Q
    |||| ||||||||||| ||||||| | ||  ||| |||||||||||||||||| |||||||| || |||||| ||||||||||||||    
T  130396 aaagcccagtaacatacctctggcgaatta-tgacgataggtgtggtaccacaatcatatagatcattagga-gagtccatatgcat 130312  T

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Target: scaffold1001 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1001
Description:

Target: scaffold1001; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 464
Target Start/End: Complemental strand, 1029 - 981
Alignment:
Q  416 taggtgtggtaccacattcatataggtc-ttaggatgagtccatatgcat 464  Q
    ||||||||||||||||||||||||||||  ||||| ||||||||||||||    
T  1029 taggtgtggtaccacattcatataggtcgatagga-gagtccatatgcat 981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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