View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14994_high_7 (Length: 320)
Name: NF14994_high_7
Description: NF14994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14994_high_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 19 - 302
Target Start/End: Complemental strand, 8338526 - 8338243
Alignment:
| Q |
19 |
cagacgggaaagcaagagaannnnnnnnctttgcaatggtataataaatcttaccgattgttgcaccagattcaacccatgcagtttcatcttgtaaatt |
118 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8338526 |
cagacgggaaagcaagagaattgtttttctttgcaatggtataataaatcttaccgattgttgcaccagattcaacccatgcagtttcatcttgtaaatt |
8338427 |
T |
|
| Q |
119 |
gagatcaactgaattgaggtgaagcaggtcaattataacagaagatacatctgatccgtaagagaagccttcgtagtcgtgaccgccacttcgaattctt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
8338426 |
gagatcaactgaattgaggtgaagcaggtcaattataacaaaagatatgtctgatacgtaagagaagccttcgtagtcgtggccgccacttcgaattctt |
8338327 |
T |
|
| Q |
219 |
atctgaatattgttgcttttggcacatttaattgttgcttggacatgagaagcatcttttgcagttataattgccaaaggtttt |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
8338326 |
atctgaatattgttgcttttggcacatttaattgttgcttggacatgagaagcatcttttgcagttataattgccaaagatttt |
8338243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 139; Significance: 1e-72; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 48 - 302
Target Start/End: Complemental strand, 36107872 - 36107618
Alignment:
| Q |
48 |
tttgcaatggtataataaatcttaccgattgttgcaccagattcaacccatgcagtttcatcttgtaaattgagatcaactgaattgaggtgaagcaggt |
147 |
Q |
| |
|
||||||||| |||||||||||||||| | ||||||||| |||||||||||||| ||| ||||||||||||| ||||||||||||||| |||| || || |
|
|
| T |
36107872 |
tttgcaatgttataataaatcttaccaagtgttgcacctgattcaacccatgctgttgattcttgtaaattgatatcaactgaattgagatgaaacatgt |
36107773 |
T |
|
| Q |
148 |
caattataacagaagatacatctgatccgtaagagaagccttcgtagtcgtgaccgccacttcgaattcttatctgaatattgttgcttttggcacattt |
247 |
Q |
| |
|
||| ||||| | ||| ||||||||| | || || || ||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
36107772 |
caagtataataaaaggcacatctgatacatatgaaaaaccttcatagtcgtgaccgccacttcgaattctaatctgaatgttgttgcttttggcacattt |
36107673 |
T |
|
| Q |
248 |
aattgttgcttggacatgagaagcatcttttgcagttataattgccaaaggtttt |
302 |
Q |
| |
|
||||||| |||||| ||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
36107672 |
aattgtttcttggatatgcgaatcatcttttgcagttataattgccaaaggtttt |
36107618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 47 - 302
Target Start/End: Complemental strand, 21482605 - 21482350
Alignment:
| Q |
47 |
ctttgcaatggtataataaatcttaccgattgttgcaccagattcaacccatgcagtttcatcttgtaaattgagatcaactgaattgaggtgaagcagg |
146 |
Q |
| |
|
|||| ||||||||||||||| ||| || | ||||||||| |||||||||||||| ||||| ||||||||||||| ||||||||||||||| ||||||| | |
|
|
| T |
21482605 |
ctttccaatggtataataaagctttccaagtgttgcacctgattcaacccatgctgtttcttcttgtaaattgacatcaactgaattgagatgaagcaag |
21482506 |
T |
|
| Q |
147 |
tcaattataacagaagatacatctgatccgtaagagaagccttcgtagtcgtgaccgccacttcgaattcttatctgaatattgttgcttttggcacatt |
246 |
Q |
| |
|
|||||||||||| ||| || |||||| | || ||||| ||||| ||||||| ||||||||||| ||||| |||||||| ||||| |||||| |||| |
|
|
| T |
21482505 |
tcaattataacaaaaggcacgtctgatacatatgagaaaccttcaaagtcgtggccgccacttcggattctgatctgaattttgttacttttgaggcatt |
21482406 |
T |
|
| Q |
247 |
taattgttgcttggacatgagaagcatcttttgcagttataattgccaaaggtttt |
302 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
21482405 |
gaattgttgcttggacatgagaatcatcttttgcagttataattgccaaaggtttt |
21482350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 47 - 302
Target Start/End: Complemental strand, 36100614 - 36100359
Alignment:
| Q |
47 |
ctttgcaatggtataataaatcttaccgattgttgcaccagattcaacccatgcagtttcatcttgtaaattgagatcaactgaattgaggtgaagcagg |
146 |
Q |
| |
|
||||| ||||||||||||||||||||| | ||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||| | |
|
|
| T |
36100614 |
ctttgaaatggtataataaatcttaccaagtgttgcaccagcttcaacccatgttgtttcatcttgtaaattgacttcaactgaattgaggtgaagcaag |
36100515 |
T |
|
| Q |
147 |
tcaattataacagaagatacatctgatccgtaagagaagccttcgtagtcgtgaccgccacttcgaattcttatctgaatattgttgcttttggcacatt |
246 |
Q |
| |
|
|||||||||||| ||| || |||||| ||| ||||||||||| || ||||| ||||||||||| ||||||| || | |||||| |||||||||||| |
|
|
| T |
36100514 |
tcaattataacataaggcacgtctgataagtatgagaagccttcataatcgtggccgccacttcggattcttaattggaagttgttgattttggcacatt |
36100415 |
T |
|
| Q |
247 |
taattgttgcttggacatgagaagcatcttttgcagttataattgccaaaggtttt |
302 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||| |||||||||||| |||| |||| |
|
|
| T |
36100414 |
taattgttgtttggacatgagaatcatcttttggagttataattgctaaagctttt |
36100359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 52 - 298
Target Start/End: Original strand, 34971777 - 34972023
Alignment:
| Q |
52 |
caatggtataataaatcttaccgattgttgcaccagattcaacccatgcagtttcatcttgtaaattgagatcaactgaattgaggtgaagcaggtcaat |
151 |
Q |
| |
|
|||| ||||||||||||||||| | ||||||||| ||||||||||||| ||| ||||||||||||| |||||||||||||||||||| || ||||| |
|
|
| T |
34971777 |
caattgtataataaatcttaccaagtgttgcacctgattcaacccatgttgttgattcttgtaaattgacatcaactgaattgaggtgaaacatgtcaag |
34971876 |
T |
|
| Q |
152 |
tataacagaagatacatctgatccgtaagagaagccttcgtagtcgtgaccgccacttcgaattcttatctgaatattgttgcttttggcacatttaatt |
251 |
Q |
| |
|
|| || | ||| ||||||||| || || || ||||| ||||| || || ||||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
34971877 |
tacaataaaaggcacatctgataaatatgataaaccttcatagtcatgccctccacttcgaattcttatctgaatgttgttacttttggcacatttaatt |
34971976 |
T |
|
| Q |
252 |
gttgcttggacatgagaagcatcttttgcagttataattgccaaagg |
298 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
34971977 |
gttgcttggacatgagaaacatcttttgcagttataattgccaaagg |
34972023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 49 - 302
Target Start/End: Original strand, 36090464 - 36090717
Alignment:
| Q |
49 |
ttgcaatggtataataaatcttaccgattgttgcaccagattcaacccatgcagtttcatcttgtaaattgagatcaactgaattgaggtgaagcaggtc |
148 |
Q |
| |
|
||||||| ||||||||||||||||| | | ||||||| |||||||||||||||||||| |||| |||||||| ||||| ||||||||| ||||||| ||| |
|
|
| T |
36090464 |
ttgcaatcgtataataaatcttaccaagtattgcacctgattcaacccatgcagtttcttcttctaaattgacatcaattgaattgagatgaagcaagtc |
36090563 |
T |
|
| Q |
149 |
aattataacagaagatacatctgatccgtaagagaagccttcgtagtcgtgaccgccacttcgaattcttatctgaatattgttgcttttggcacattta |
248 |
Q |
| |
|
|||||||||| ||| | |||||| | | || || |||||||| || || ||||||||||||||||| |||||||| ||||| ||||| ||||||||| |
|
|
| T |
36090564 |
aattataacataaggcatgtctgatacatttgataaaccttcgtaatcatgtccgccacttcgaattctgatctgaatgttgttacttttagcacattta |
36090663 |
T |
|
| Q |
249 |
attgttgcttggacatgagaagcatcttttgcagttataattgccaaaggtttt |
302 |
Q |
| |
|
| |||| |||||||||| ||| ||| ||| | ||||||||||||||||||||| |
|
|
| T |
36090664 |
actgttacttggacatgggaactatcctttactgttataattgccaaaggtttt |
36090717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 47 - 298
Target Start/End: Complemental strand, 6838634 - 6838383
Alignment:
| Q |
47 |
ctttgcaatggtataataaatcttaccgattgttgcaccagattcaacccatgcagtttcatcttgtaaattgagatcaactgaattgaggtgaagcagg |
146 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||||| |||||||||||||| ||| ||||||||||||| |||||| |||||||| |||| || | |
|
|
| T |
6838634 |
ctttgcaatggtataataaatcttaccaagtgttgcacctgattcaacccatgctgttgattcttgtaaattgacatcaacagaattgagatgaaacatg |
6838535 |
T |
|
| Q |
147 |
tcaattataacagaagatacatctgatccgtaagagaagccttcgtagtcgtgaccgccacttcgaattcttatctgaatattgttgcttttggcacatt |
246 |
Q |
| |
|
|||| ||||||| ||| ||||||||| | || || | ||||| ||||||||||| |||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
6838534 |
tcaagtataacaaaaggcacatctgatacatatgaacaaccttcatagtcgtgaccaccacttcgaattctaatctgaatgttgttgcttttggcacatt |
6838435 |
T |
|
| Q |
247 |
taattgttgcttggacatgagaagcatcttttgcagttataattgccaaagg |
298 |
Q |
| |
|
||| |||| |||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
6838434 |
taactgtttcttggacatgagaatcatcttttacagttataattgccaaagg |
6838383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University