View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14994_low_1 (Length: 752)
Name: NF14994_low_1
Description: NF14994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14994_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 8 - 523
Target Start/End: Original strand, 26612430 - 26612935
Alignment:
| Q |
8 |
tgaaatgaaatatgtatttatagagttaggagaaagaacatgttacaatgaaactgnnnnnnnggatatgttgggtattatgataatgttttgnnnnnnn |
107 |
Q |
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| T |
26612430 |
tgaaatgaaatatgtatttatagagttaggagaaagaacatgttacaatgaaactgaaaaaaaggatatgttaggtattatgataatgttttgttttttt |
26612529 |
T |
|
| Q |
108 |
attgacagctattataataaatacttttgatgtcgcacgaggtgcgcgcgagatgcataaacttgacaagatttagatgtacaaacctgaacaatgattt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
26612530 |
attgacagctattataataaatacttttgatgtcgcacgaggtgcgcgcgagatgcataaacttgacaagatttagatgtacaaacttgaacaatgattt |
26612629 |
T |
|
| Q |
208 |
agataatggttggtgtttccac--nnnnnnntgtggtttgttgagcctacttaccactttggattttcaatctatcttcaccatcttccattcatcctat |
305 |
Q |
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| T |
26612630 |
agataatggttggtgtttccacaaaaaaaaatgtggtttgttgagcctacttaccactttggattttcaatct---------atcttccattcatcctat |
26612720 |
T |
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| Q |
306 |
ttgaatgtttttattttattattgatacaaagttttttactgtcatttaaggatgattaatctgaattgaagaagttttaagacatatatataaggtgga |
405 |
Q |
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|||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||| | |||||||||||||||| ||||||||||| ||||| |
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| T |
26612721 |
ttgaatgtttttcttttattattgatacaaag-attttactgtcatttaagggtgattaatctaagttgaagaagttttaaggcatatatataaagtgga |
26612819 |
T |
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| Q |
406 |
ttgttcactttcgattgaannnnnnnaaatgtttaagtgtaattcataaaaattgtataaagggattttaatgtttctttaagagtattgctagaaagta |
505 |
Q |
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| T |
26612820 |
ttgttcactttcgattgaa-atttttaaatgtttaagtgtaattcataaaaatt-tataaagggattttaatgtttctttaagagtattgttagaaagta |
26612917 |
T |
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| Q |
506 |
aaatgtgtttgttgttat |
523 |
Q |
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|||||||||||||||||| |
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| T |
26612918 |
aaatgtgtttgttgttat |
26612935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 595 - 706
Target Start/End: Original strand, 26613013 - 26613124
Alignment:
| Q |
595 |
gttgtttaagttaattcgttcccagctaaattttttaagtttgtaaatgtttgcatcgttgctcttttattcacctttactaatctttaactttgttgtt |
694 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
26613013 |
gttgtttaagttaattcgttcccagctaaattttttaagtttgtaaatgtttgcatcattgctcttttattcacctttactaatctttaactttgttgtt |
26613112 |
T |
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| Q |
695 |
actatatctttg |
706 |
Q |
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|||||||||||| |
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| T |
26613113 |
actatatctttg |
26613124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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