View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14994_low_12 (Length: 286)

Name: NF14994_low_12
Description: NF14994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14994_low_12
NF14994_low_12
[»] chr5 (13 HSPs)
chr5 (17-275)||(39451140-39451398)
chr5 (17-275)||(39475646-39475904)
chr5 (21-272)||(39486608-39486859)
chr5 (20-208)||(39458074-39458259)
chr5 (24-206)||(39460456-39460638)
chr5 (21-275)||(39472176-39472424)
chr5 (21-274)||(39454780-39455027)
chr5 (17-210)||(39483462-39483655)
chr5 (17-128)||(39464332-39464443)
chr5 (17-210)||(39470534-39470724)
chr5 (160-272)||(39464451-39464560)
chr5 (21-122)||(43312315-43312416)
chr5 (237-276)||(39460389-39460428)


Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 17 - 275
Target Start/End: Complemental strand, 39451398 - 39451140
Alignment:
Q  17 agattcaaaccaagggaagcaacgccagaagtgaagaagacgagcataggaactgaaaattctttggcaatatcaatcatggtggtgcagaacatgtcaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39451398 agattcaaaccaagggaagcaacgccagaagtgaagaagacgagcataggaactgaaaattctttggcaatatcaatcatggtggtgcagaacatgtcaa 39451299  T
Q  117 caacgatggtggcaaggactccattttctcctcctccagtagtgaggttagaaacggcttgtttgacatttggtttctgagcttcgaggagagcaggcat 216  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39451298 caacgatggtggcgaggactccattttctcctcctccagtagtgaggttagaaacggcttgtttgacatttggtttctgagcttcgaggagagcaggcat 39451199  T
Q  217 ggaagcgaaacctggattggtgtttggaggaagagaaacttctggaaggttgatgatgt 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39451198 ggaagcgaaacctggattggtgtttggaggaagagaaacttctggaaggttgatgatgt 39451140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 17 - 275
Target Start/End: Complemental strand, 39475904 - 39475646
Alignment:
Q  17 agattcaaaccaagggaagcaacgccagaagtgaagaagacgagcataggaactgaaaattctttggcaatatcaatcatggtggtgcagaacatgtcaa 116  Q
    ||||||||||||||||||||||| |||||||||||||| |||||| |||| ||    || || ||||||| ||  |||||||||||||||||||||||||    
T  39475904 agattcaaaccaagggaagcaacaccagaagtgaagaaaacgagcgtagggacattgaactcattggcaacattgatcatggtggtgcagaacatgtcaa 39475805  T
Q  117 caacgatggtggcaaggactccattttctcctcctccagtagtgaggttagaaacggcttgtttgacatttggtttctgagcttcgaggagagcaggcat 216  Q
    |||||| || ||| |||  ||||| || |||| ||| |||||||||||| || || |||||||| || |||||||||||||||||||||||||| | |||    
T  39475804 caacgaaggcggcgaggtgtccatgttgtccttctctagtagtgaggttggagacagcttgttttacgtttggtttctgagcttcgaggagagctgtcat 39475705  T
Q  217 ggaagcgaaacctggattggtgtttggaggaagagaaacttctggaaggttgatgatgt 275  Q
    ||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  39475704 ggaagagaaacctggatcggtgtttgggggaagagaaacttctggaaggttgatgatgt 39475646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 21 - 272
Target Start/End: Complemental strand, 39486859 - 39486608
Alignment:
Q  21 tcaaaccaagggaagcaacgccagaagtgaagaagacgagcataggaactgaaaattctttggcaatatcaatcatggtggtgcagaacatgtcaacaac 120  Q
    ||||||||||  ||||||| || ||||||||||||| ||||  ||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39486859 tcaaaccaagaaaagcaacaccggaagtgaagaagatgagcgcagggatggaaaattctttggcaatatcaatcatggtggtgcagaacatgtcaacaac 39486760  T
Q  121 gatggtggcaaggactcca---ttttctcctcctccagtagtgaggttagaaacggcttgtttgacatttggtttctgagcttcgaggagagcaggcatg 217  Q
    || || |||||||  ||||     || |||| ||| |||||||||||| || || ||||||||||| ||||||||||||||||| ||||||||   ||||    
T  39486759 gaaggcggcaaggtgtccaggtggttgtccttctctagtagtgaggttggatacagcttgtttgacgtttggtttctgagcttcaaggagagcgttcatg 39486660  T
Q  218 gaagcgaaacctggattggtgtttggaggaagagaaacttctggaaggttgatga 272  Q
        | |||| ||| | ||||||||| |||||||||  |||||||||||||||||    
T  39486659 ---acaaaacgtggttcggtgtttgggggaagagaacattctggaaggttgatga 39486608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 20 - 208
Target Start/End: Original strand, 39458074 - 39458259
Alignment:
Q  20 ttcaaaccaagggaagcaacgccagaagtgaagaagacgagcataggaactgaaaattctttggcaatatcaatcatggtggtgcagaacatgtcaacaa 119  Q
    |||||||||||| ||||||| || |||||||||||||||||| |||| || |||||||||||  ||| ||||||||||||||||||||||||||||||||    
T  39458074 ttcaaaccaaggaaagcaacaccggaagtgaagaagacgagcgtagggacagaaaattcttttacaacatcaatcatggtggtgcagaacatgtcaacaa 39458173  T
Q  120 cgatggtggcaaggactccattttctcctcctccagtagtgaggttagaaacggcttgtttgacatttggtttctgagcttcgaggaga 208  Q
     ||  |  || |||||||||||||||  | ||    |||||||||| || ||||||| |||||| |||||||||||||||| |||||||    
T  39458174 tgaatgcagctaggactccattttctggtgct---ttagtgaggttggagacggcttttttgacgtttggtttctgagctttgaggaga 39458259  T

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Target: chr5; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 24 - 206
Target Start/End: Complemental strand, 39460638 - 39460456
Alignment:
Q  24 aaccaagggaagcaacgccagaagtgaagaagacgagcataggaactgaaaattctttggcaatatcaatcatggtggtgcagaacatgtcaacaacgat 123  Q
    |||||||||||||||| || |||||||||||||| ||| |||| |||||||||||||||||||||||||||||  | |||||||||||||||||||| |     
T  39460638 aaccaagggaagcaacaccggaagtgaagaagacaagcgtagggactgaaaattctttggcaatatcaatcattttagtgcagaacatgtcaacaacaaa 39460539  T
Q  124 ggtggcaaggactccattttctcctcctccagtagtgaggttagaaacggcttgtttgacatttggtttctgagcttcgagga 206  Q
    ||  |  |||  ||||| || | |||    ||||||||| ||||| |||||||||||||| |||| |||||||||||||||||    
T  39460538 ggctgtgagggttccatgtttttctctagtagtagtgagattagatacggcttgtttgacgtttgatttctgagcttcgagga 39460456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 21 - 275
Target Start/End: Complemental strand, 39472424 - 39472176
Alignment:
Q  21 tcaaaccaagggaagcaacgccagaagtgaagaagacgagcataggaactgaaaattctttggcaatatcaatcatggtggtgcagaacatgtcaacaac 120  Q
    |||| |||||| | ||||| || |||||||||||||| ||| |||| || || || |||||||||| |||||||||| | ||||||||||||||||||||    
T  39472424 tcaatccaaggaacgcaacaccggaagtgaagaagacaagcgtagggacagagaactctttggcaacatcaatcatgtttgtgcagaacatgtcaacaac 39472325  T
Q  121 gatggtggcaaggactccattttctcctcctccagtagtgaggttagaaacggcttgtttgacatttggtttctgagcttcgaggagagcaggcatggaa 220  Q
     |  | |||||||||||||||||   ||  ||  ||| |||||||||| ||  |||||||||| ||||||||||||||||||||||| |||| |||   |    
T  39472324 aaaagcggcaaggactccatttt---ctgatctggtaatgaggttagatactacttgtttgacgtttggtttctgagcttcgaggagcgcagtcat---a 39472231  T
Q  221 gcgaaacctggattggtgtttggaggaagagaaacttctggaaggttgatgatgt 275  Q
    | |  |||| |||  |||||||| | |||||||  ||||||||||||||||||||    
T  39472230 gagggaccttgatctgtgtttggggcaagagaacattctggaaggttgatgatgt 39472176  T

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Target: chr5; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 21 - 274
Target Start/End: Complemental strand, 39455027 - 39454780
Alignment:
Q  21 tcaaaccaagggaagcaacgccagaagtgaagaagacgagcataggaactgaaaattctttggcaatatcaatcatggtggtgcagaacatgtcaacaac 120  Q
    ||||||||||| |||| || |  |||||||||||||||||  |||| |  || || |||||||||| |||||||||||  |||||| |||||||||||||    
T  39455027 tcaaaccaaggaaagctacactggaagtgaagaagacgagtgtagggatggagaactctttggcaacatcaatcatggctgtgcaggacatgtcaacaac 39454928  T
Q  121 gatggtggcaaggactccattttctcctcctccagtagtgaggttagaaacggcttgtttgacatttggtttctgagcttcgaggagagcaggcatggaa 220  Q
    ||  |  || ||||||||| || || | ||   |||| |||||||||| |||||||||||||| ||||||||||||||||| ||| |||| | ||||||     
T  39454927 gaaagctgcgaggactccacttgcttcacc---agtaatgaggttagatacggcttgtttgacgtttggtttctgagcttcaaggtgagcggacatgga- 39454832  T
Q  221 gcgaaacctggattggtgtttggaggaagagaaacttctggaaggttgatgatg 274  Q
      | || ||||||| |||||||| ||||||||   |||||||||||||||||||    
T  39454831 --ggaaactggattagtgtttgggggaagagagcattctggaaggttgatgatg 39454780  T

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Target: chr5; HSP #8
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 17 - 210
Target Start/End: Complemental strand, 39483655 - 39483462
Alignment:
Q  17 agattcaaaccaagggaagcaacgccagaagtgaagaagacgagcataggaactgaaaattctttggcaatatcaatcatggtggtgcagaacatgtcaa 116  Q
    ||||||||||||||||||||||| |   ||||| |||| |||||| |||| ||    || || ||||||| |||||||||||||||||||||||||||||    
T  39483655 agattcaaaccaagggaagcaacactgaaagtgtagaaaacgagcgtagggacattgaactcattggcaacatcaatcatggtggtgcagaacatgtcaa 39483556  T
Q  117 caacgatggtggcaaggactccattttctcctcctccagtagtgaggttagaaacggcttgtttgacatttggtttctgagcttcgaggagagc 210  Q
    |||||| || ||  |||  ||||| || |||| ||| |||||||||||| || || |||||| | |  ||||||||||||||||| ||||||||    
T  39483555 caacgaaggcggagaggtgtccatgttgtccttctctagtagtgaggttggagacagcttgtattatgtttggtttctgagcttcaaggagagc 39483462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 17 - 128
Target Start/End: Original strand, 39464332 - 39464443
Alignment:
Q  17 agattcaaaccaagggaagcaacgccagaagtgaagaagacgagcataggaactgaaaattctttggcaatatcaatcatggtggtgcagaacatgtcaa 116  Q
    ||||||||||||||| ||||||| |  ||||||||||| || | |  ||| || |||||||| ||||||| |||||||||| ||||||||||||||||||    
T  39464332 agattcaaaccaaggaaagcaacactcgaagtgaagaacacaaacgcagggacggaaaattccttggcaacatcaatcatgttggtgcagaacatgtcaa 39464431  T
Q  117 caacgatggtgg 128  Q
    |||||| |||||    
T  39464432 caacgaaggtgg 39464443  T

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Target: chr5; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 17 - 210
Target Start/End: Original strand, 39470534 - 39470724
Alignment:
Q  17 agattcaaaccaagggaagcaacgccagaagtgaagaagacgagcataggaactgaaaattctttggcaatatcaatcatggtggtgcagaacatgtcaa 116  Q
    ||||||||||||||| |||||| ||| |||||||| || || | |  ||| |  |||||||||||||||| |||||||||| | ||||||||||||||||    
T  39470534 agattcaaaccaaggaaagcaatgccggaagtgaacaacacaaacgcagggagggaaaattctttggcaacatcaatcatgtttgtgcagaacatgtcaa 39470633  T
Q  117 caacgatggtggcaaggactccattttctcctcctccagtagtgaggttagaaacggcttgtttgacatttggtttctgagcttcgaggagagc 210  Q
    ||| ||  | ||| |||  ||||| ||    | |||||||||||||||| || |  ||||||||||| |||| ||| |||||||||||||||||    
T  39470634 caatgacagcggcgaggggtccatgtt---gttctccagtagtgaggttggagatagcttgtttgacgtttgctttatgagcttcgaggagagc 39470724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 272
Target Start/End: Original strand, 39464451 - 39464560
Alignment:
Q  160 gaggttagaaacggcttgtttgacatttggtttctgagcttcgaggagagcaggcatggaagcgaaacctggattggtgtttggaggaagagaaacttct 259  Q
    ||||||||| |||||||||||||| |||||||| ||||| || ||||||||   |||   |||| |||||||||  | | || | |||||||||||||||    
T  39464451 gaggttagagacggcttgtttgacgtttggtttgtgagcatcaaggagagcgttcat---agcggaacctggatcagaggtttggggaagagaaacttct 39464547  T
Q  260 ggaaggttgatga 272  Q
    |||||||||||||    
T  39464548 ggaaggttgatga 39464560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 122
Target Start/End: Original strand, 43312315 - 43312416
Alignment:
Q  21 tcaaaccaagggaagcaacgccagaagtgaagaagacgagcataggaactgaaaattctttggcaatatcaatcatggtggtgcagaacatgtcaacaac 120  Q
    ||||||||||| ||||||| || ||||||||| |||||||   ||| ||   ||| || || || | |||||||||||||||||||||||||||||||||    
T  43312315 tcaaaccaaggaaagcaacaccggaagtgaagtagacgagggaagggacaccaaagtcattagctacatcaatcatggtggtgcagaacatgtcaacaac 43312414  T
Q  121 ga 122  Q
    ||    
T  43312415 ga 43312416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 276
Target Start/End: Complemental strand, 39460428 - 39460389
Alignment:
Q  237 tgtttggaggaagagaaacttctggaaggttgatgatgtc 276  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  39460428 tgtttgggggaagagaaacttctggaaggttgatgatgtc 39460389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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