View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14994_low_13 (Length: 270)
Name: NF14994_low_13
Description: NF14994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14994_low_13 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 13 - 270
Target Start/End: Original strand, 40062886 - 40063143
Alignment:
| Q |
13 |
atcatcaggtcgaagaagcttgagatgtttcaatggcataccattctccgatttaagagtaggtgatgaaacaacaagtgcaacatagtgaccaggattt |
112 |
Q |
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| T |
40062886 |
atcatcaggtcgaagaagcttgagatgtttcaatggcataccattctccgatttaagagtaggtgatgaaacaacaagtgcaacatagtgaccaggattt |
40062985 |
T |
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| Q |
113 |
gagttcataacctcatgagcactaacagaccaataaatcctctcaaccttgttccctggatgatgaatcacaactgttgccaattctgcagcttgacaat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
40062986 |
gagttcataacctcatgagcactaacagaccaataaatcctctcaaccttgttccctggacgatgaatcacaactgttgccaattctgcagcttgacaat |
40063085 |
T |
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| Q |
213 |
tccccatattctaacaatttcttgtagaagtgaagtgaagcgggtttgtgctgtgttg |
270 |
Q |
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| T |
40063086 |
tccccatattctaacaatttcttgtagaagtgaagtgaagtgggtttgtgctgtgttg |
40063143 |
T |
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