View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14994_low_14 (Length: 269)
Name: NF14994_low_14
Description: NF14994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14994_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 20 - 252
Target Start/End: Original strand, 50751774 - 50752006
Alignment:
| Q |
20 |
gagcacagagtcatagttgtgaaggagtttttgtaacttagaaaggaccttgttgatgaaaagtgtttgatcaaggcatgacttacggtgttgtggacca |
119 |
Q |
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| T |
50751774 |
gagcatagagtcatagttgtgaaggagtttttgtaactttgaaaggacattgttgatgaaaagtgtttgatcaaggcatgacttacggtgttgtggacca |
50751873 |
T |
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| Q |
120 |
tgcaaatttgttacttttactaattgctattgattgattgatctttgtaccaatcacatttttcttcttcttttttacaaaaattatcttcttctctcta |
219 |
Q |
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| T |
50751874 |
tgcaaatttgttacttttactaattgctattgattgattgatctttgtaccaatcacatttttcttcttcttttttacaaaaattatcttcttctctcta |
50751973 |
T |
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| Q |
220 |
aaacccttgttcaatattattgttatataattt |
252 |
Q |
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| T |
50751974 |
aaacccttgttcaatattattgttatataattt |
50752006 |
T |
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Back To:
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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 235
Target Start/End: Original strand, 223865 - 223899
Alignment:
| Q |
201 |
aattatcttcttctctctaaaacccttgttcaata |
235 |
Q |
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| T |
223865 |
aattatcttcttctctctaaaactcttgttcaata |
223899 |
T |
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