View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14994_low_15 (Length: 269)

Name: NF14994_low_15
Description: NF14994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14994_low_15
NF14994_low_15
[»] scaffold0038 (5 HSPs)
scaffold0038 (5-255)||(44112-44362)
scaffold0038 (5-233)||(28605-28833)
scaffold0038 (70-245)||(40739-40910)
scaffold0038 (5-87)||(35882-35964)
scaffold0038 (173-233)||(28893-28953)
[»] chr6 (53 HSPs)
chr6 (5-255)||(28243950-28244200)
chr6 (5-255)||(28326633-28326883)
chr6 (5-255)||(28504269-28504519)
chr6 (5-232)||(28186549-28186776)
chr6 (5-243)||(28296529-28296767)
chr6 (5-243)||(28515306-28515544)
chr6 (5-233)||(28228107-28228335)
chr6 (71-245)||(28140756-28140930)
chr6 (70-245)||(28240577-28240748)
chr6 (71-239)||(29842785-29842953)
chr6 (71-255)||(29827207-29827391)
chr6 (82-246)||(26624503-26624667)
chr6 (82-246)||(26730480-26730644)
chr6 (73-255)||(28182341-28182514)
chr6 (82-233)||(26950975-26951126)
chr6 (73-239)||(26812751-26812917)
chr6 (82-246)||(27680182-27680346)
chr6 (82-246)||(27705040-27705204)
chr6 (71-239)||(28787459-28787627)
chr6 (86-246)||(31285795-31285955)
chr6 (82-233)||(27609919-27610070)
chr6 (82-233)||(27664013-27664164)
chr6 (82-239)||(28793591-28793748)
chr6 (82-233)||(26978612-26978763)
chr6 (82-233)||(27697385-27697536)
chr6 (82-232)||(26960357-26960507)
chr6 (5-87)||(28235720-28235802)
chr6 (82-239)||(26647711-26647868)
chr6 (82-239)||(26753679-26753836)
chr6 (82-239)||(27717292-27717449)
chr6 (82-233)||(25075099-25075250)
chr6 (82-233)||(26636878-26637029)
chr6 (82-233)||(26742844-26742995)
chr6 (82-185)||(26849944-26850047)
chr6 (82-239)||(26803678-26803835)
chr6 (80-245)||(27426399-27426564)
chr6 (71-243)||(28097232-28097404)
chr6 (82-233)||(26862812-26862963)
chr6 (82-234)||(25492117-25492269)
chr6 (85-185)||(26938264-26938364)
chr6 (82-246)||(27591807-27591971)
chr6 (82-246)||(27676406-27676570)
chr6 (82-245)||(26885299-26885462)
chr6 (82-239)||(27603497-27603654)
chr6 (82-245)||(26657194-26657357)
chr6 (82-245)||(26763165-26763328)
chr6 (82-233)||(26825051-26825202)
chr6 (79-234)||(27215681-27215836)
chr6 (173-233)||(28228395-28228455)
chr6 (88-231)||(2186064-2186207)
chr6 (73-135)||(29476962-29477024)
chr6 (82-231)||(29469444-29469593)
chr6 (161-245)||(27530091-27530175)
[»] scaffold0019 (1 HSPs)
scaffold0019 (5-255)||(57071-57321)
[»] chr2 (4 HSPs)
chr2 (73-245)||(3280882-3281054)
chr2 (82-233)||(17992014-17992165)
chr2 (71-134)||(17662492-17662555)
chr2 (71-134)||(17713518-17713581)
[»] chr5 (1 HSPs)
chr5 (10-242)||(16692027-16692259)
[»] chr4 (8 HSPs)
chr4 (76-222)||(5089760-5089906)
chr4 (82-233)||(18678355-18678506)
chr4 (82-232)||(18722881-18723031)
chr4 (82-233)||(18654272-18654423)
chr4 (82-233)||(18698195-18698346)
chr4 (82-233)||(18730299-18730450)
chr4 (82-233)||(18688421-18688572)
chr4 (80-245)||(18074991-18075156)
[»] chr8 (4 HSPs)
chr8 (71-245)||(35984520-35984694)
chr8 (71-243)||(31906275-31906447)
chr8 (82-233)||(29272637-29272788)
chr8 (81-132)||(16353855-16353906)
[»] scaffold1870 (1 HSPs)
scaffold1870 (82-239)||(1-158)
[»] scaffold0277 (2 HSPs)
scaffold0277 (82-239)||(12468-12625)
scaffold0277 (82-239)||(3505-3662)
[»] scaffold0419 (1 HSPs)
scaffold0419 (82-239)||(8719-8876)
[»] chr1 (5 HSPs)
chr1 (71-246)||(267126-267301)
chr1 (82-245)||(28126462-28126625)
chr1 (82-233)||(26137120-26137271)
chr1 (107-245)||(28132288-28132426)
chr1 (83-233)||(5922268-5922418)
[»] scaffold0349 (1 HSPs)
scaffold0349 (82-239)||(2332-2489)
[»] scaffold0003 (1 HSPs)
scaffold0003 (80-245)||(60799-60964)


Alignment Details
Target: scaffold0038 (Bit Score: 187; Significance: 1e-101; HSPs: 5)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 5 - 255
Target Start/End: Original strand, 44112 - 44362
Alignment:
Q  5 aattgttgaggtggaaggctttcaaaaataacaaggtcgattcaaatttcgatggtgttttgcgttgtgcagtaacttatgcttctggccttccattggc 104  Q
    ||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  44112 aattgttgaggtggaattctttcaaaaataacaaggtggattcaaatttcgatggtgttttacggtgtgcagtaacttatgcttctggccttccattggc 44211  T
Q  105 tttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcggtatgaaaggattccgattaaagagatccaagag 204  Q
    |||||||||||| ||||| ||||| |||||||| ||||||||||| ||||||||||||||||||||||||  |||||||||||||||| |||| || |||    
T  44212 tttagaagtagtgggttcaaacttatttggaaataatataggagaatggaaatctgcattagatcggtatagaaggattccgattaaaaagatacaggag 44311  T
Q  205 atacttaaagtaagctttgatgctttggagaaagatgagcaggatgttttt 255  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  44312 atacttaaagtaagctttgatgctttggagaaagatgagcagaatgttttt 44362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 5 - 233
Target Start/End: Original strand, 28605 - 28833
Alignment:
Q  5 aattgttgaggtggaaggctttcaaaaataacaaggtcgattcaaatttcgatggtgttttgcgttgtgcagtaacttatgcttctggccttccattggc 104  Q
    ||||| |||||||||| ||||||||| |||||| ||||||||||||||||||  |||||||||| ||||||||||||| | ||| |||| |||||||||     
T  28605 aattgatgaggtggaacgctttcaaatataacatggtcgattcaaatttcgaccgtgttttgcggtgtgcagtaactttttcttttggcattccattggt 28704  T
Q  105 tttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcggtatgaaaggattccgattaaagagatccaagag 204  Q
    |||||||||||| ||||| ||||||||||| |||||||| | ||| ||||||||||||||| ||| | | ||||||||||| |||||| | |||  ||||    
T  28705 tttagaagtagtgggttcaaacttgtttgggaagaatattgaagaatggaaatctgcattaaatcaggaagaaaggattcccattaaaaatatcatagag 28804  T
Q  205 atacttaaagtaagctttgatgctttgga 233  Q
    ||||||||| ||||||||||| |||||||    
T  28805 atacttaaaataagctttgatactttgga 28833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 70 - 245
Target Start/End: Original strand, 40739 - 40910
Alignment:
Q  70 tgtgcagtaacttatgcttctggccttccattggctttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatc 169  Q
    |||||| ||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||    |||||||||| ||| ||||  ||||||| |    
T  40739 tgtgcaataacttatgcttctggcctaccattagctttagaagtagttggttccaacttgtttggattagatataggagaatgggaatccacattagacc 40838  T
Q  170 ggtatgaaaggattccgattaaagagatccaagagatacttaaagtaagctttgatgctttggagaaagatgagca 245  Q
     ||||||||||||||| | ||||||||||||| |||||||||||||    ||||||||||||||||||||||||||    
T  40839 agtatgaaaggattccaaataaagagatccaaaagatacttaaagt----tttgatgctttggagaaagatgagca 40910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 35882 - 35964
Alignment:
Q  5 aattgttgaggtggaaggctttcaaaaataacaaggtcgattcaaatttcgatggtgttttgcgttgtgcagtaacttatgct 87  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||||| | ||||||||| | ||||||||||||||||||    
T  35882 aattgttgaggtggaaggctttaaaatataacaaggtcgattcaaatttcaacggtgttttgaggtgtgcagtaacttatgct 35964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 233
Target Start/End: Original strand, 28893 - 28953
Alignment:
Q  173 atgaaaggattccgattaaagagatccaagagatacttaaagtaagctttgatgctttgga 233  Q
    ||||||||||||| |||||| | |||  ||||||||||||| |||||||||||||||||||    
T  28893 atgaaaggattcccattaaaaatatcacagagatacttaaaataagctttgatgctttgga 28953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 53)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 5 - 255
Target Start/End: Original strand, 28243950 - 28244200
Alignment:
Q  5 aattgttgaggtggaaggctttcaaaaataacaaggtcgattcaaatttcgatggtgttttgcgttgtgcagtaacttatgcttctggccttccattggc 104  Q
    ||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  28243950 aattgttgaggtggaattctttcaaaaataacaaggtggattcaaatttcgatggtgttttacggtgtgcagtaacttatgcttctggccttccattggc 28244049  T
Q  105 tttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcggtatgaaaggattccgattaaagagatccaagag 204  Q
    |||||||||||| ||||| ||||| |||||||| ||||||||||| ||||||||||||||||||||||||  |||||||||||||||| |||| || |||    
T  28244050 tttagaagtagtgggttcaaacttatttggaaataatataggagaatggaaatctgcattagatcggtatagaaggattccgattaaaaagatacaggag 28244149  T
Q  205 atacttaaagtaagctttgatgctttggagaaagatgagcaggatgttttt 255  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  28244150 atacttaaagtaagctttgatgctttggagaaagatgagcagaatgttttt 28244200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 5 - 255
Target Start/End: Original strand, 28326633 - 28326883
Alignment:
Q  5 aattgttgaggtggaaggctttcaaaaataacaaggtcgattcaaatttcgatggtgttttgcgttgtgcagtaacttatgcttctggccttccattggc 104  Q
    ||||||||||||||||  |||||||||||||||| |||||||||||||| || ||  ||||    |||||||||||||||||||||||||||||||||||    
T  28326633 aattgttgaggtggaatactttcaaaaataacaaagtcgattcaaattttgacggcattttatactgtgcagtaacttatgcttctggccttccattggc 28326732  T
Q  105 tttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcggtatgaaaggattccgattaaagagatccaagag 204  Q
    |||||||||||| |||||||||||||||||||||||||||| ||| || |||||||||||| ||| ||||||||||||||| |||||| ||||||||| |    
T  28326733 tttagaagtagtgggttccaacttgtttggaaagaatatagtagaatgtaaatctgcattatatcagtatgaaaggattcccattaaaaagatccaagcg 28326832  T
Q  205 atacttaaagtaagctttgatgctttggagaaagatgagcaggatgttttt 255  Q
    |||||||||||||||||||||||||||||  ||||||||||| ||||||||    
T  28326833 atacttaaagtaagctttgatgctttggatgaagatgagcagaatgttttt 28326883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 5 - 255
Target Start/End: Original strand, 28504269 - 28504519
Alignment:
Q  5 aattgttgaggtggaaggctttcaaaaataacaaggtcgattcaaatttcgatggtgttttgcgttgtgcagtaacttatgcttctggccttccattggc 104  Q
    ||||||||||||||||  |||||||||||||||| |||||||||||||| || ||  ||||    |||||||||||||||||||||||||||||||||||    
T  28504269 aattgttgaggtggaatactttcaaaaataacaaagtcgattcaaattttgacggcattttatactgtgcagtaacttatgcttctggccttccattggc 28504368  T
Q  105 tttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcggtatgaaaggattccgattaaagagatccaagag 204  Q
    |||||||||||| |||||||||||||||||||||||||||| ||| || |||||||||||| ||| ||||||||||||||| |||||| ||||||||| |    
T  28504369 tttagaagtagtgggttccaacttgtttggaaagaatatagtagaatgtaaatctgcattatatcagtatgaaaggattcccattaaaaagatccaagcg 28504468  T
Q  205 atacttaaagtaagctttgatgctttggagaaagatgagcaggatgttttt 255  Q
    |||||||||||||||||||||||||||||  ||||||||||| ||||||||    
T  28504469 atacttaaagtaagctttgatgctttggatgaagatgagcagaatgttttt 28504519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 5 - 232
Target Start/End: Original strand, 28186549 - 28186776
Alignment:
Q  5 aattgttgaggtggaaggctttcaaaaataacaaggtcgattcaaatttcgatggtgttttgcgttgtgcagtaacttatgcttctggccttccattggc 104  Q
    ||||||||| |||||||||||| ||||||||||| || ||| ||||||||||  | ||||| |    |||||||||||||||||||||||||||||||||    
T  28186549 aattgttgacgtggaaggctttaaaaaataacaaagttgatacaaatttcgacagcgttttacaccatgcagtaacttatgcttctggccttccattggc 28186648  T
Q  105 tttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcggtatgaaaggattccgattaaagagatccaagag 204  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||   |||| |||||||||||    
T  28186649 tttagaagtagtgggttccaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccgataaaaagatccaagag 28186748  T
Q  205 atacttaaagtaagctttgatgctttgg 232  Q
    ||||| ||||||||||||||||||||||    
T  28186749 atactcaaagtaagctttgatgctttgg 28186776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 5 - 243
Target Start/End: Complemental strand, 28296767 - 28296529
Alignment:
Q  5 aattgttgaggtggaaggctttcaaaaataacaaggtcgattcaaatttcgatggtgttttgcgttgtgcagtaacttatgcttctggccttccattggc 104  Q
    |||||||||| ||||| ||||||||||||||||| |||||| ||||||| || |   |||| |     || |||||||||||||||||||||||||||||    
T  28296767 aattgttgagatggaatgctttcaaaaataacaaagtcgatacaaattttgacgacattttacaccaggctgtaacttatgcttctggccttccattggc 28296668  T
Q  105 tttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcggtatgaaaggattccgattaaagagatccaagag 204  Q
    |||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||  || |||||||||||  || |||| | |||||||||||    
T  28296667 tttagaagtagtgggttccaacttgtttggaaagaatataagagaatggaaatctgcattaagtcagtatgaaaggagacccattagaaagatccaagag 28296568  T
Q  205 atacttaaagtaagctttgatgctttggagaaagatgag 243  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  28296567 atacttaaagtaagctttgatgctttggaggaagatgag 28296529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 5 - 243
Target Start/End: Original strand, 28515306 - 28515544
Alignment:
Q  5 aattgttgaggtggaaggctttcaaaaataacaaggtcgattcaaatttcgatggtgttttgcgttgtgcagtaacttatgcttctggccttccattggc 104  Q
    |||||||||| ||||| ||||||||||||||||| |||||| ||||||| || |   |||| |     || |||||||||||||||||||||||||||||    
T  28515306 aattgttgagatggaatgctttcaaaaataacaaagtcgatacaaattttgacgacattttacaccaggctgtaacttatgcttctggccttccattggc 28515405  T
Q  105 tttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcggtatgaaaggattccgattaaagagatccaagag 204  Q
    |||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||  || |||||||||||  || |||| | |||||||||||    
T  28515406 tttagaagtagtgggttccaacttgtttggaaagaatataagagaatggaaatctgcattaagtcagtatgaaaggagacccattagaaagatccaagag 28515505  T
Q  205 atacttaaagtaagctttgatgctttggagaaagatgag 243  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  28515506 atacttaaagtaagctttgatgctttggaggaagatgag 28515544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 5 - 233
Target Start/End: Original strand, 28228107 - 28228335
Alignment:
Q  5 aattgttgaggtggaaggctttcaaaaataacaaggtcgattcaaatttcgatggtgttttgcgttgtgcagtaacttatgcttctggccttccattggc 104  Q
    ||||| |||||||||| ||||||||| |||||| ||||||||||||||||||  |||||||||| ||||||||||||| | ||| |||| |||||||||     
T  28228107 aattgatgaggtggaacgctttcaaatataacatggtcgattcaaatttcgaccgtgttttgcggtgtgcagtaactttttcttttggcattccattggt 28228206  T
Q  105 tttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcggtatgaaaggattccgattaaagagatccaagag 204  Q
    |||||||||||| ||||| ||||||||||| |||||||| | ||| ||||||||||||||| ||| | | ||||||||||| |||||| | |||  ||||    
T  28228207 tttagaagtagtgggttcaaacttgtttgggaagaatattgaagaatggaaatctgcattaaatcaggaagaaaggattcccattaaaaatatcatagag 28228306  T
Q  205 atacttaaagtaagctttgatgctttgga 233  Q
    ||||||||| ||||||||||| |||||||    
T  28228307 atacttaaaataagctttgatactttgga 28228335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 71 - 245
Target Start/End: Original strand, 28140756 - 28140930
Alignment:
Q  71 gtgcagtaacttatgcttctggccttccattggctttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcg 170  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||| ||||| | ||||||||||||| ||| ||  |||||||||||| ||||||||||    
T  28140756 gtgcagttacttatgcctctggccttccattggctttagaagtagttggttctagcttgtttggaaagcataaagatgagtggaaatctacattagatcg 28140855  T
Q  171 gtatgaaaggattccgattaaagagatccaagagatacttaaagtaagctttgatgctttggagaaagatgagca 245  Q
    |||||||||||||||   ||||||| |||   ||||||||||||| |||||||||  ||||||||||||||||||    
T  28140856 gtatgaaaggattcctcataaagaggtcctgaagatacttaaagtgagctttgatagtttggagaaagatgagca 28140930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 70 - 245
Target Start/End: Original strand, 28240577 - 28240748
Alignment:
Q  70 tgtgcagtaacttatgcttctggccttccattggctttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatc 169  Q
    |||||| ||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||    |||||||||| ||| ||||  ||||||| |    
T  28240577 tgtgcaataacttatgcttctggcctaccattagctttagaagtagttggttccaacttgtttggattagatataggagaatgggaatccacattagacc 28240676  T
Q  170 ggtatgaaaggattccgattaaagagatccaagagatacttaaagtaagctttgatgctttggagaaagatgagca 245  Q
     ||||||||||||||| | ||||||||||||| |||||||||||||    ||||||||||||||||||||||||||    
T  28240677 agtatgaaaggattccaaataaagagatccaaaagatacttaaagt----tttgatgctttggagaaagatgagca 28240748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 71 - 239
Target Start/End: Complemental strand, 29842953 - 29842785
Alignment:
Q  71 gtgcagtaacttatgcttctggccttccattggctttagaagtagtaggttccaactt-gtttggaaagaatataggagagtggaaatctgcattagatc 169  Q
    ||||| || ||||||||||||||||||| |||| ||||||| |||||||| ||| ||| ||||||||||||||||| ||| ||||||||| ||||||||     
T  29842953 gtgcaatagcttatgcttctggccttccgttggttttagaattagtaggt-ccagctttgtttggaaagaatatagaagaatggaaatctacattagata 29842855  T
Q  170 ggtatgaaaggattccgattaaagagatccaagagatacttaaagtaagctttgatgctttggagaaaga 239  Q
    |||||||||||||||| | ||||||||||||  | ||||||||| |||||||||||||||||||| ||||    
T  29842854 ggtatgaaaggattcctaataaagagatccacaatatacttaaaataagctttgatgctttggaggaaga 29842785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 71 - 255
Target Start/End: Original strand, 29827207 - 29827391
Alignment:
Q  71 gtgcagtaacttatgcttctggccttccattggctttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcg 170  Q
    ||||| || ||||||||||||||||||| |||| ||||||| |||||||| ||   ||||||||||||||||||| ||| |||||||||  ||||||| |    
T  29827207 gtgcaatagcttatgcttctggccttccgttggttttagaattagtaggtcccgcgttgtttggaaagaatatagaagaatggaaatctatattagatag 29827306  T
Q  171 gtatgaaaggattccgattaaagagatccaagagatacttaaagtaagctttgatgctttggagaaagatgagcaggatgttttt 255  Q
     |||||||||||||| | ||||||||||||| | ||||||||| |||| ||||||||||||||| ||||||| || | |||||||    
T  29827307 atatgaaaggattcctaataaagagatccaaaatatacttaaaataagttttgatgctttggaggaagatgaacaaggtgttttt 29827391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 82 - 246
Target Start/End: Original strand, 26624503 - 26624667
Alignment:
Q  82 tatgcttctggccttccattggctttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcggtatgaaagga 181  Q
    ||||||||||||||||| || | ||||||| | || ||||||||||||||||||||||  |||| ||| ||||| | | |||||||| ||||||| ||||    
T  26624503 tatgcttctggccttccgttagttttagaaattgtgggttccaacttgtttggaaagagcatagaagaatggaagtatacattagatgggtatgacagga 26624602  T
Q  182 ttccgattaaagagatccaagagatacttaaagtaagctttgatgctttggagaaagatgagcag 246  Q
    |||| | ||||||||||||| ||||||||||||| |||| ||||||||||||  |||| ||||||    
T  26624603 ttcccaataaagagatccaaaagatacttaaagtgagctatgatgctttggaagaagaggagcag 26624667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 82 - 246
Target Start/End: Original strand, 26730480 - 26730644
Alignment:
Q  82 tatgcttctggccttccattggctttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcggtatgaaagga 181  Q
    ||||||||||||||||| || | ||||||| | || ||||||||||||||||||||||  |||| ||| ||||| | | |||||||| ||||||| ||||    
T  26730480 tatgcttctggccttccgttagttttagaaattgtgggttccaacttgtttggaaagagcatagaagaatggaagtatacattagatgggtatgacagga 26730579  T
Q  182 ttccgattaaagagatccaagagatacttaaagtaagctttgatgctttggagaaagatgagcag 246  Q
    |||| | ||||||||||||| ||||||||||||| |||| ||||||||||||  |||| ||||||    
T  26730580 ttcccaataaagagatccaaaagatacttaaagtgagctatgatgctttggaagaagaggagcag 26730644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 73 - 255
Target Start/End: Original strand, 28182341 - 28182514
Alignment:
Q  73 gcagtaacttatgcttctggccttccattggctttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcggt 172  Q
    |||||||||| ||| || | |||||||||||||||||||||||| ||||||||||||||||||||||||||  |||| | |||||||||||||           
T  28182341 gcagtaacttttgcatcagtccttccattggctttagaagtagtgggttccaacttgtttggaaagaatatgagagaatcgaaatctgcatta------- 28182433  T
Q  173 atgaaaggattccgattaaagagatccaagagatacttaaagtaagctttgatgctttggagaaagatgagcaggatgttttt 255  Q
        ||||||||| || ||| |||||||||||||||||||||| |||| ||||||| ||||| | ||||||||| ||||||||    
T  28182434 --acaaggattcccatgaaaaagatccaagagatacttaaagttagctatgatgctctggaggatgatgagcagaatgttttt 28182514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 82 - 233
Target Start/End: Original strand, 26950975 - 26951126
Alignment:
Q  82 tatgcttctggccttccattggctttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcggtatgaaagga 181  Q
    |||||| ||||||||||||| |||||||||||||| ||||| |||||||||||||||| ||||| ||| ||  | |||  |||||||  ||||||||| |    
T  26950975 tatgctgctggccttccattagctttagaagtagtgggttctaacttgtttggaaagactatagcagaatgtgagtctttattagataagtatgaaagaa 26951074  T
Q  182 ttccgattaaagagatccaagagatacttaaagtaagctttgatgctttgga 233  Q
    ||||   | |||| |||||| |||||||||||||||||||||||||||||||    
T  26951075 ttccacatgaagatatccaaaagatacttaaagtaagctttgatgctttgga 26951126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 73 - 239
Target Start/End: Original strand, 26812751 - 26812917
Alignment:
Q  73 gcagtaacttatgcttctggccttccattggctttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcggt 172  Q
    |||||||  ||| |||||||||||||||| ||| |||||||||| |||||||||||||||||||||| ||| | ||||||| ||||| ||||||||  ||    
T  26812751 gcagtaaaatatacttctggccttccattagctatagaagtagtgggttccaacttgtttggaaagagtattgaagagtgggaatctacattagataagt 26812850  T
Q  173 atgaaaggattccgattaaagagatccaagagatacttaaagtaagctttgatgctttggagaaaga 239  Q
    |||||||||  ||   | |||| |||||| | ||| | ||||||||||||||||||||||| |||||    
T  26812851 atgaaaggacgccacctgaagatatccaaaatatattcaaagtaagctttgatgctttggacaaaga 26812917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 82 - 246
Target Start/End: Original strand, 27680182 - 27680346
Alignment:
Q  82 tatgcttctggccttccattggctttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcggtatgaaagga 181  Q
    ||||||| ||||||||| || | |||||||||||| ||||| ||||||||||||||||  |||| ||| |||||   | |||||||| ||||||| ||||    
T  27680182 tatgcttttggccttccgttagttttagaagtagtgggttctaacttgtttggaaagagcatagaagattggaagcatacattagatgggtatgacagga 27680281  T
Q  182 ttccgattaaagagatccaagagatacttaaagtaagctttgatgctttggagaaagatgagcag 246  Q
    |||| | ||||||||||||| |||||||||| || |||| ||||||||||||  |||| ||||||    
T  27680282 ttcccaataaagagatccaaaagatacttaaggtgagctatgatgctttggaagaagaggagcag 27680346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 82 - 246
Target Start/End: Complemental strand, 27705204 - 27705040
Alignment:
Q  82 tatgcttctggccttccattggctttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcggtatgaaagga 181  Q
    ||||||||||||||||| || | |||||||||| | ||||| ||||||||||| ||||| |||| ||| |||||   | |||||||| ||||||| ||||    
T  27705204 tatgcttctggccttccgttagttttagaagtaatgggttctaacttgtttggcaagaacatagaagaatggaagaatacattagatgggtatgacagga 27705105  T
Q  182 ttccgattaaagagatccaagagatacttaaagtaagctttgatgctttggagaaagatgagcag 246  Q
    |||| | ||||||||||||| ||||||||| ||| |||| ||||||||||||  |||| ||||||    
T  27705104 ttcccaataaagagatccaaaagatacttagagtgagctatgatgctttggaagaagaggagcag 27705040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 71 - 239
Target Start/End: Original strand, 28787459 - 28787627
Alignment:
Q  71 gtgcagtaacttatgcttctggccttccattggctttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcg 170  Q
    |||||||  |||||||||| |||||||| || | ||||||| |||| ||||||||||||||||||||||  |||| ||| |||||   | | |||||| |    
T  28787459 gtgcagtttcttatgcttcgggccttcccttagttttagaaatagtgggttccaacttgtttggaaagacgatagaagaatggaagggtactttagatgg 28787558  T
Q  171 gtatgaaaggattccgattaaagagatccaagagatacttaaagtaagctttgatgctttggagaaaga 239  Q
     ||||||| |||||| | |||| ||||||| ||||||||||||||||||| ||||||||||||| ||||    
T  28787559 atatgaaaagattcccaataaaaagatccacgagatacttaaagtaagctatgatgctttggaggaaga 28787627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 86 - 246
Target Start/End: Original strand, 31285795 - 31285955
Alignment:
Q  86 cttctggccttccattggctttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcggtatgaaaggattcc 185  Q
    |||||||||||||||| | | |||||||||| ||||| ||||||||||||||||  |||| | | |||||   | |||||||| ||||||| | ||||||    
T  31285795 cttctggccttccattagttatagaagtagtgggttcaaacttgtttggaaagagcatagaaaaatggaagagtacattagatgggtatgacaagattcc 31285894  T
Q  186 gattaaagagatccaagagatacttaaagtaagctttgatgctttggagaaagatgagcag 246  Q
     | ||||||||||||| |||||||||||||||||| ||||||||||||  |||| ||||||    
T  31285895 caataaagagatccaaaagatacttaaagtaagctatgatgctttggaagaagaggagcag 31285955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 82 - 233
Target Start/End: Complemental strand, 27610070 - 27609919
Alignment:
Q  82 tatgcttctggccttccattggctttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcggtatgaaagga 181  Q
    ||||||||||||||||| || | | ||||| |||| ||||| ||||||||||||||||| ||||  || ||||| | | |||||||| ||||||| ||||    
T  27610070 tatgcttctggccttccgttagttatagaaatagtgggttctaacttgtttggaaagaacatagaggaatggaagtatacattagatgggtatgacagga 27609971  T
Q  182 ttccgattaaagagatccaagagatacttaaagtaagctttgatgctttgga 233  Q
    |||| | ||||||||||||| ||||||||||||| |||| |||| |||||||    
T  27609970 ttcccaataaagagatccaaaagatacttaaagtgagctatgattctttgga 27609919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 82 - 233
Target Start/End: Complemental strand, 27664164 - 27664013
Alignment:
Q  82 tatgcttctggccttccattggctttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcggtatgaaagga 181  Q
    |||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||| ||||| ||| ||  | ||  | ||||||  ||||||||| |    
T  27664164 tatgcttctggccttccattagctttaaaagtagtgggttccaacttgtttggaaagagtatagcagattgtgagtcaaccttagataagtatgaaagaa 27664065  T
Q  182 ttccgattaaagagatccaagagatacttaaagtaagctttgatgctttgga 233  Q
    ||||   | |||| |||||| ||||||||||||||||||||||| |||||||    
T  27664064 ttccacctgaagatatccaaaagatacttaaagtaagctttgatactttgga 27664013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 82 - 239
Target Start/End: Original strand, 28793591 - 28793748
Alignment:
Q  82 tatgcttctggccttccattggctttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcggtatgaaagga 181  Q
    |||||||| |||||||| || | ||||||| |||| ||||||||||||||||||||||  |||| ||| |||||   | | |||||| | ||||||| ||    
T  28793591 tatgcttcgggccttcccttagttttagaaatagtgggttccaacttgtttggaaagacgatagaagaatggaagggtactttagatggatatgaaaaga 28793690  T
Q  182 ttccgattaaagagatccaagagatacttaaagtaagctttgatgctttggagaaaga 239  Q
    |||| | |||| ||||||| ||||||||||||||||||| ||||||||||||| ||||    
T  28793691 ttcccaataaaaagatccacgagatacttaaagtaagctatgatgctttggaggaaga 28793748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 82 - 233
Target Start/End: Original strand, 26978612 - 26978763
Alignment:
Q  82 tatgcttctggccttccattggctttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcggtatgaaagga 181  Q
    ||||||||||| |||||||| |||||||||||||| ||||| | |||||||||||||| ||||| ||||||  | |||  |||||||  ||||| ||| |    
T  26978612 tatgcttctggtcttccattagctttagaagtagtgggttcaagcttgtttggaaagagtatagcagagtgtgagtctatattagataagtatggaagaa 26978711  T
Q  182 ttccgattaaagagatccaagagatacttaaagtaagctttgatgctttgga 233  Q
    ||||   | || | |||||| |||||||||||||||||||||||||||||||    
T  26978712 ttccacctgaacatatccaaaagatacttaaagtaagctttgatgctttgga 26978763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 82 - 233
Target Start/End: Complemental strand, 27697536 - 27697385
Alignment:
Q  82 tatgcttctggccttccattggctttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcggtatgaaagga 181  Q
    |||| |||||||||||| || | | ||||| |||| ||||| ||||||||||||||||| |||| ||| ||||| | |  ||||||| ||||||| ||||    
T  27697536 tatgtttctggccttccgttagttatagaaatagtgggttctaacttgtttggaaagaacatagaagaatggaagtatatattagatgggtatgacagga 27697437  T
Q  182 ttccgattaaagagatccaagagatacttaaagtaagctttgatgctttgga 233  Q
    |||| | ||||||||||||| ||||||||| ||| |||| ||||||||||||    
T  27697436 ttcccaataaagagatccaaaagatacttagagtgagctatgatgctttgga 27697385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 82 - 232
Target Start/End: Original strand, 26960357 - 26960507
Alignment:
Q  82 tatgcttctggccttccattggctttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcggtatgaaagga 181  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||| ||||| ||| ||  | |||  |||||||  |||||| || |    
T  26960357 tatgcttctggccttccattagctttagaagtagtgggttccaacttgtttggcaagagtatagcagaatgtgagtctttattagataagtatgacagaa 26960456  T
Q  182 ttccgattaaagagatccaagagatacttaaagtaagctttgatgctttgg 232  Q
    ||||   | |||| |||||| |||||||||||||||||| ||| |||||||    
T  26960457 ttccacatgaagatatccaaaagatacttaaagtaagctatgacgctttgg 26960507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 28235720 - 28235802
Alignment:
Q  5 aattgttgaggtggaaggctttcaaaaataacaaggtcgattcaaatttcgatggtgttttgcgttgtgcagtaacttatgct 87  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||||| | ||||||||| | ||||||||||||||||||    
T  28235720 aattgttgaggtggaaggctttaaaatataacaaggtcgattcaaatttcaacggtgttttgaggtgtgcagtaacttatgct 28235802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 82 - 239
Target Start/End: Original strand, 26647711 - 26647868
Alignment:
Q  82 tatgcttctggccttccattggctttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcggtatgaaagga 181  Q
    |||||||| |||||||| || | ||||||| |||| ||||||||||| | ||||||||  |||| ||| |||||   | |||||||| | ||||||| ||    
T  26647711 tatgcttcaggccttcccttagttttagaaatagtgggttccaacttatatggaaagagcatagaagaatggaagggtacattagatggatatgaaaaga 26647810  T
Q  182 ttccgattaaagagatccaagagatacttaaagtaagctttgatgctttggagaaaga 239  Q
    |||| | |||| ||||||| ||||||||||||||||||| ||||||||||||| ||||    
T  26647811 ttcccaataaaaagatccacgagatacttaaagtaagctatgatgctttggaggaaga 26647868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 82 - 239
Target Start/End: Original strand, 26753679 - 26753836
Alignment:
Q  82 tatgcttctggccttccattggctttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcggtatgaaagga 181  Q
    |||||||| |||||||| || | ||||||| |||| ||||||||||| | ||||||||  |||| ||| |||||   | |||||||| | ||||||| ||    
T  26753679 tatgcttcaggccttcccttagttttagaaatagtgggttccaacttatatggaaagagcatagaagaatggaagggtacattagatggatatgaaaaga 26753778  T
Q  182 ttccgattaaagagatccaagagatacttaaagtaagctttgatgctttggagaaaga 239  Q
    |||| | |||| ||||||| ||||||||||||||||||| ||||||||||||| ||||    
T  26753779 ttcccaataaaaagatccacgagatacttaaagtaagctatgatgctttggaggaaga 26753836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 82 - 239
Target Start/End: Complemental strand, 27717449 - 27717292
Alignment:
Q  82 tatgcttctggccttccattggctttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcggtatgaaagga 181  Q
    ||||||||||||||||| || | | ||||| |||| ||||| ||||| | ||||||||| ||||  || |||||   | |||||||| ||||||| ||||    
T  27717449 tatgcttctggccttccgttagttatagaaatagtgggttctaacttatctggaaagaacatagaggaatggaagaatacattagatgggtatgacagga 27717350  T
Q  182 ttccgattaaagagatccaagagatacttaaagtaagctttgatgctttggagaaaga 239  Q
    |||| | ||||||||||||| |||||||||||||||| | ||||||||||||| ||||    
T  27717349 ttcccaataaagagatccaaaagatacttaaagtaagttatgatgctttggaggaaga 27717292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 82 - 233
Target Start/End: Original strand, 25075099 - 25075250
Alignment:
Q  82 tatgcttctggccttccattggctttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcggtatgaaagga 181  Q
    |||||||||||||||||||| ||||||||||| || ||||||||||||||||||| || || |  ||| ||  | ||| ||||||||  ||||||||| |    
T  25075099 tatgcttctggccttccattagctttagaagttgtgggttccaacttgtttggaatgagtacaacagaatgcgagtctacattagataagtatgaaagaa 25075198  T
Q  182 ttccgattaaagagatccaagagatacttaaagtaagctttgatgctttgga 233  Q
    ||||   | |||| |||||| | |||||||||||||||||||| ||||||||    
T  25075199 ttccacctgaagatatccaaaaaatacttaaagtaagctttgacgctttgga 25075250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 82 - 233
Target Start/End: Original strand, 26636878 - 26637029
Alignment:
Q  82 tatgcttctggccttccattggctttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcggtatgaaagga 181  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||| ||| ||  | |||  |||||||  |||||| || |    
T  26636878 tatgcttctggccttccattagctttagaagtagtgggttccaacttgtttggaaagagtatagcagaatgtgagtctttattagataagtatgacagaa 26636977  T
Q  182 ttccgattaaagagatccaagagatacttaaagtaagctttgatgctttgga 233  Q
    ||||   | |||| |||||| |||| |||||||| |||| ||| ||||||||    
T  26636978 ttccacatgaagatatccaaaagattcttaaagttagctatgacgctttgga 26637029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 82 - 233
Target Start/End: Original strand, 26742844 - 26742995
Alignment:
Q  82 tatgcttctggccttccattggctttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcggtatgaaagga 181  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||| ||| ||  | |||  |||||||  |||||| || |    
T  26742844 tatgcttctggccttccattagctttagaagtagtgggttccaacttgtttggaaagagtatagcagaatgtgagtctttattagataagtatgacagaa 26742943  T
Q  182 ttccgattaaagagatccaagagatacttaaagtaagctttgatgctttgga 233  Q
    ||||   | |||| |||||| |||| |||||||| |||| ||| ||||||||    
T  26742944 ttccacatgaagatatccaaaagattcttaaagttagctatgacgctttgga 26742995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 82 - 185
Target Start/End: Original strand, 26849944 - 26850047
Alignment:
Q  82 tatgcttctggccttccattggctttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcggtatgaaagga 181  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||| ||| ||  | ||| ||||||||  ||||||||| |    
T  26849944 tatgcttctggccttccattagctttagaagtagtgggttccaacttgtttggaaagagtatagaagaatgcgagtctacattagataagtatgaaagaa 26850043  T
Q  182 ttcc 185  Q
    ||||    
T  26850044 ttcc 26850047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 82 - 239
Target Start/End: Original strand, 26803678 - 26803835
Alignment:
Q  82 tatgcttctggccttccattggctttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcggtatgaaagga 181  Q
    |||||||| || ||||| || | ||||||  |||| ||||||||||||||||||||||  |||  ||| |||||   | |||||||| | ||||||| ||    
T  26803678 tatgcttcaggtcttcccttagttttagagatagtgggttccaacttgtttggaaagagcataaaagaatggaagggtacattagatggatatgaaaaga 26803777  T
Q  182 ttccgattaaagagatccaagagatacttaaagtaagctttgatgctttggagaaaga 239  Q
    |||| | |||| ||||||| ||||||||||||||||||| ||||||||||||| ||||    
T  26803778 ttcccaataaaaagatccacgagatacttaaagtaagctatgatgctttggaggaaga 26803835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 80 - 245
Target Start/End: Complemental strand, 27426564 - 27426399
Alignment:
Q  80 cttatgcttctggccttccattggctttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcggtatgaaag 179  Q
    |||||||||||||||||||  | | | ||||| |||| ||||| ||||||||||||||||| |||| ||| || ||   | |||||||| |||||||||     
T  27426564 cttatgcttctggccttccggtagttatagaaatagtgggttctaacttgtttggaaagaacatagaagaatgcaagaatacattagattggtatgaaaa 27426465  T
Q  180 gattccgattaaagagatccaagagatacttaaagtaagctttgatgctttggagaaagatgagca 245  Q
    |||||| | |||||||||||||   ||||||||||| |||| |||| |||||||| |||| |||||    
T  27426464 gattcccaataaagagatccaaagaatacttaaagtgagctatgattctttggaggaagaggagca 27426399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 71 - 243
Target Start/End: Complemental strand, 28097404 - 28097232
Alignment:
Q  71 gtgcagtaacttatgcttctggccttccattggctttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcg 170  Q
    ||||| ||| ||||||| |||||||||||||||| || ||| || ||||||||||||||| ||||||| |||||| ||| ||||| |||   || |||||    
T  28097404 gtgcaataaattatgctgctggccttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatggaattctttgttggatcg 28097305  T
Q  171 gtatgaaaggattccgattaaagagatccaagagatacttaaagtaagctttgatgctttggagaaagatgag 243  Q
     |||||||| ||||| | | ||||||| ||| | ||||||   || || ||||||||||||||| ||||||||    
T  28097304 atatgaaagaattcctagtgaagagattcaaaaaatacttcgtgtgagttttgatgctttggaggaagatgag 28097232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 82 - 233
Target Start/End: Original strand, 26862812 - 26862963
Alignment:
Q  82 tatgcttctggccttccattggctttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcggtatgaaagga 181  Q
    |||||||| |||||||| || | | | ||| |||| ||||| ||||||||||||||||  || | ||| ||| |||   |||||||| ||||||||| ||    
T  26862812 tatgcttccggccttccgttagttctcgaaatagtgggttctaacttgtttggaaagagcatggaagaatggcaatgcacattagatgggtatgaaaaga 26862911  T
Q  182 ttccgattaaagagatccaagagatacttaaagtaagctttgatgctttgga 233  Q
    |||| | |||||||||||||  ||||||||||||||||| ||||||||||||    
T  26862912 ttcccaataaagagatccaaaggatacttaaagtaagctatgatgctttgga 26862963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 82 - 234
Target Start/End: Complemental strand, 25492269 - 25492117
Alignment:
Q  82 tatgcttctggccttccattggctttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcggtatgaaagga 181  Q
    |||||||||||||||||||| ||||||| | || |||| || || ||||||||||| |  |||| ||| ||||| | | ||||||||  |||||||| ||    
T  25492269 tatgcttctggccttccattagctttagtaataatagggtcaaatttgtttggaaatagcatagaagaatggaagtgtacattagatgagtatgaaaaga 25492170  T
Q  182 ttccgattaaagagatccaagagatacttaaagtaagctttgatgctttggag 234  Q
    ||   | ||||||||||||| ||||||||| ||| |||| |||||||||||||    
T  25492169 ttttcaataaagagatccaaaagatacttagagtgagctatgatgctttggag 25492117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 85 - 185
Target Start/End: Original strand, 26938264 - 26938364
Alignment:
Q  85 gcttctggccttccattggctttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcggtatgaaaggattc 184  Q
    ||||||||||||||||| ||||||||||| ||||||||| | ||||||||||||  ||||| ||| ||| ||||| |||||| |  ||||||||||||||    
T  26938264 gcttctggccttccattagctttagaagttgtaggttcccatttgtttggaaagtgtatagcagaatgggaatctacattagctaagtatgaaaggattc 26938363  T
Q  185 c 185  Q
    |    
T  26938364 c 26938364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 82 - 246
Target Start/End: Complemental strand, 27591971 - 27591807
Alignment:
Q  82 tatgcttctggccttccattggctttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcggtatgaaagga 181  Q
    |||||||||||||||||||| ||  |||||||||| ||||| |||||||||||||||| ||| | ||| ||  | ||| ||||||||  ||||| ||| |    
T  27591971 tatgcttctggccttccattagcgatagaagtagtgggttctaacttgtttggaaagagtattgcagaatgtgagtctacattagataagtatggaagaa 27591872  T
Q  182 ttccgattaaagagatccaagagatacttaaagtaagctttgatgctttggagaaagatgagcag 246  Q
    ||||   |||||| |||||| ||||||||| | | |||| ||||||||||||  |||| ||||||    
T  27591871 ttccacataaagatatccaaaagatacttagactcagctatgatgctttggaagaagaggagcag 27591807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 82 - 246
Target Start/End: Complemental strand, 27676570 - 27676406
Alignment:
Q  82 tatgcttctggccttccattggctttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcggtatgaaagga 181  Q
    |||||||||||||||||||| ||  |||||||||| ||||| |||||||||||||||| ||| | ||| ||  | ||| ||||||||  ||||| ||| |    
T  27676570 tatgcttctggccttccattagcgatagaagtagtgggttctaacttgtttggaaagagtattgcagaatgtgagtctacattagataagtatggaagaa 27676471  T
Q  182 ttccgattaaagagatccaagagatacttaaagtaagctttgatgctttggagaaagatgagcag 246  Q
    ||||   |||||| |||||| ||||||||| | | |||| ||||||||||||  |||| ||||||    
T  27676470 ttccacataaagatatccaaaagatacttagactgagctatgatgctttggacgaagaggagcag 27676406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 82 - 245
Target Start/End: Original strand, 26885299 - 26885462
Alignment:
Q  82 tatgcttctggccttccattggctttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcggtatgaaagga 181  Q
    |||||||| |||||||| || | | ||||| |||| ||||||||||||||||||||||  |||| |   |||||   | || ||||| | ||||||| ||    
T  26885299 tatgcttcgggccttcctttagttatagaaatagtgggttccaacttgtttggaaagagcatagaaacatggaagagtacactagatggatatgaaaaga 26885398  T
Q  182 ttccgattaaagagatccaagagatacttaaagtaagctttgatgctttggagaaagatgagca 245  Q
    |||| | || | ||||||||||||||||||||||||||| ||||||||| ||| |||| |||||    
T  26885399 ttcctaatacaaagatccaagagatacttaaagtaagctatgatgctttagaggaagaggagca 26885462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 82 - 239
Target Start/End: Complemental strand, 27603654 - 27603497
Alignment:
Q  82 tatgcttctggccttccattggctttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcggtatgaaagga 181  Q
    |||||||| || ||||| || | ||| |||||||| ||||||||||||||||||||||  |||| ||| |||||   | | |||||  | ||||| | ||    
T  27603654 tatgcttcaggacttcccttagttttggaagtagtgggttccaacttgtttggaaagaggatagaagaatggaagggtacgttagaaggatatgagaaga 27603555  T
Q  182 ttccgattaaagagatccaagagatacttaaagtaagctttgatgctttggagaaaga 239  Q
    |||| | |||| ||||||| ||||| ||||||||||||| ||||||||||||| ||||    
T  27603554 ttcccaataaaaagatccacgagattcttaaagtaagctatgatgctttggaggaaga 27603497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 82 - 245
Target Start/End: Original strand, 26657194 - 26657357
Alignment:
Q  82 tatgcttctggccttccattggctttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcggtatgaaagga 181  Q
    |||||||| || ||||| || | | |||||||||| | ||| ||||||||||||||||  || | | | |||||   | |||||||| | ||||||| ||    
T  26657194 tatgcttcaggacttcccttagttatagaagtagtggcttcaaacttgtttggaaagagcatcgaaaaatggaagagtacattagatggatatgaaaaga 26657293  T
Q  182 ttccgattaaagagatccaagagatacttaaagtaagctttgatgctttggagaaagatgagca 245  Q
    |||| | |||| |||| |||||||||||||||||||||| ||||| ||||||| |||| |||||    
T  26657294 ttcccaataaaaagattcaagagatacttaaagtaagctatgatgatttggaggaagaggagca 26657357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 82 - 245
Target Start/End: Original strand, 26763165 - 26763328
Alignment:
Q  82 tatgcttctggccttccattggctttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcggtatgaaagga 181  Q
    |||||||| || ||||| || | | |||||||||| | ||| ||||||||||||||||  || | | | |||||   | |||||||| | ||||||| ||    
T  26763165 tatgcttcaggacttcccttagttatagaagtagtggcttcaaacttgtttggaaagagcatcgaaaaatggaagagtacattagatggatatgaaaaga 26763264  T
Q  182 ttccgattaaagagatccaagagatacttaaagtaagctttgatgctttggagaaagatgagca 245  Q
    |||| | |||| |||| |||||||||||||||||||||| ||||| ||||||| |||| |||||    
T  26763265 ttcccaataaaaagattcaagagatacttaaagtaagctatgatgatttggaggaagaggagca 26763328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 82 - 233
Target Start/End: Original strand, 26825051 - 26825202
Alignment:
Q  82 tatgcttctggccttccattggctttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcggtatgaaagga 181  Q
    |||||||| |||||||| || |  |||||| |||| |||||||| |||||||||||||  |||  |   |||||   |||||||||| | ||||||||||    
T  26825051 tatgcttcgggccttcccttagtattagaaatagtgggttccaatttgtttggaaagagcatacaaatatggaagggtgcattagatggatatgaaagga 26825150  T
Q  182 ttccgattaaagagatccaagagatacttaaagtaagctttgatgctttgga 233  Q
    ||||    ||| |||||||||||||||||| |||||||| ||||||||||||    
T  26825151 ttcctgacaaaaagatccaagagatacttagagtaagctatgatgctttgga 26825202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 234
Target Start/End: Original strand, 27215681 - 27215836
Alignment:
Q  79 acttatgcttctggccttccattggctttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcggtatgaaa 178  Q
    ||||||| ||||||||||||||| ||| ||| |  | |||| ||||| |||||||||| || | ||| ||| ||| ||  |  |||||||  ||||||||    
T  27215681 acttatgtttctggccttccattagctatagtaacaatagggtccaatttgtttggaaggagtgtagaagattgggaacgtatattagatgagtatgaaa 27215780  T
Q  179 ggattccgattaaagagatccaagagatacttaaagtaagctttgatgctttggag 234  Q
     |||||| | |||||||||||||  |||||||||||| |||| ||||||| |||||    
T  27215781 agattcccaataaagagatccaaaggatacttaaagtcagctatgatgctctggag 27215836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 233
Target Start/End: Original strand, 28228395 - 28228455
Alignment:
Q  173 atgaaaggattccgattaaagagatccaagagatacttaaagtaagctttgatgctttgga 233  Q
    ||||||||||||| |||||| | |||  ||||||||||||| |||||||||||||||||||    
T  28228395 atgaaaggattcccattaaaaatatcacagagatacttaaaataagctttgatgctttgga 28228455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 231
Target Start/End: Original strand, 2186064 - 2186207
Alignment:
Q  88 tctggccttccattggctttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcggtatgaaaggattccga 187  Q
    |||||||||||||| |||||||||||||| |||||  |||||| |||||||  || ||  || ||||  ||| |||| | ||| |||||||||| |        
T  2186064 tctggccttccattagctttagaagtagtgggttctgacttgtctggaaagtctaaagacgaatggagttctacattggctcgatatgaaaggactgttc 2186163  T
Q  188 ttaaagagatccaagagatacttaaagtaagctttgatgctttg 231  Q
     |||| | |||||| ||||||||||||| |||||||||||||||    
T  2186164 ctaaaaacatccaacagatacttaaagtcagctttgatgctttg 2186207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 135
Target Start/End: Complemental strand, 29477024 - 29476962
Alignment:
Q  73 gcagtaacttatgcttctggccttccattggctttagaagtagtaggttccaacttgtttgga 135  Q
    ||||||||||||||||| || ||||||||||| || |||||| ||||||| | ||||||||||    
T  29477024 gcagtaacttatgcttccgggcttccattggccttggaagtaataggttcaagcttgtttgga 29476962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 231
Target Start/End: Original strand, 29469444 - 29469593
Alignment:
Q  82 tatgcttctggccttccattggctttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcggtatgaaagga 181  Q
    |||||||||||||||||| ||||||| |||||  |||||||  |||| |||   ||||  || | | | || |||| |||||||||||| ||||||||||    
T  29469444 tatgcttctggccttccactggctttggaagtcataggttctcacttttttaataagacaattgaacaatgtaaatatgcattagatcgttatgaaagga 29469543  T
Q  182 ttccgattaaagagatccaagagatacttaaagtaagctttgatgctttg 231  Q
    ||||   |||| ||||||||  ||||||  || | |||||||||||||||    
T  29469544 ttcctgataaaaagatccaaacgatactacaacttagctttgatgctttg 29469593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 245
Target Start/End: Complemental strand, 27530175 - 27530091
Alignment:
Q  161 cattagatcggtatgaaaggattccgattaaagagatccaagagatacttaaagtaagctttgatgctttggagaaagatgagca 245  Q
    |||||||| ||||||||   ||||| | |||||||||||||   ||||||||||| |||| |||| ||||||||||||| |||||    
T  27530175 cattagatgggtatgaagaaattcccaataaagagatccaaagaatacttaaagtgagctatgattctttggagaaagaagagca 27530091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 151; Significance: 6e-80; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 5 - 255
Target Start/End: Complemental strand, 57321 - 57071
Alignment:
Q  5 aattgttgaggtggaaggctttcaaaaataacaaggtcgattcaaatttcgatggtgttttgcgttgtgcagtaacttatgcttctggccttccattggc 104  Q
    |||||||||||||||| ||||||||||||||||| ||| || ||||||||||    ||||| |    |||||||||||||||||| ||||||||||||||    
T  57321 aattgttgaggtggaatgctttcaaaaataacaaagtcaatccaaatttcgacaacgttttacaccttgcagtaacttatgcttcaggccttccattggc 57222  T
Q  105 tttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcggtatgaaaggattccgattaaagagatccaagag 204  Q
     ||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||| |||||| |||||||||||    
T  57221 cttagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccaagag 57122  T
Q  205 atacttaaagtaagctttgatgctttggagaaagatgagcaggatgttttt 255  Q
    |||||||||||||||||||||||||||||| |||||||| || ||||||||    
T  57121 atacttaaagtaagctttgatgctttggaggaagatgagaagaatgttttt 57071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 73 - 245
Target Start/End: Original strand, 3280882 - 3281054
Alignment:
Q  73 gcagtaacttatgcttctggccttccattggctttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcggt 172  Q
    ||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||  ||||||||| |||   || ||||| |    
T  3280882 gcagtaaattatgcttctggccttccattggcattagaagtattaggttccaacttgtttggaaagaatataaaagagtggaattctttgttggatcgat 3280981  T
Q  173 atgaaaggattccgattaaagagatccaagagatacttaaagtaagctttgatgctttggagaaagatgagca 245  Q
    ||||||||||||| | ||||||||| ||  ||||||||||||| || ||||||||||||||| |||| |||||    
T  3280982 atgaaaggattcctaataaagagattcagaagatacttaaagtgagttttgatgctttggaggaagacgagca 3281054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 82 - 233
Target Start/End: Complemental strand, 17992165 - 17992014
Alignment:
Q  82 tatgcttctggccttccattggctttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcggtatgaaagga 181  Q
    |||||| ||||||| ||||| |||||||||||||| |||||||||||||||||||||  | ||| ||| ||||||| |||||| |||  |||||||||||    
T  17992165 tatgctgctggcctcccattagctttagaagtagtgggttccaacttgtttggaaagtgtttagcagattggaaatgtgcattggataagtatgaaagga 17992066  T
Q  182 ttccgattaaagagatccaagagatacttaaagtaagctttgatgctttgga 233  Q
    | ||   | |||| |||||| | ||||| ||| |||||||||||||| ||||    
T  17992065 taccacctgaagatatccaaaatatactaaaaataagctttgatgctctgga 17992014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 71 - 134
Target Start/End: Original strand, 17662492 - 17662555
Alignment:
Q  71 gtgcagtaacttatgcttctggccttccattggctttagaagtagtaggttccaacttgtttgg 134  Q
    |||||||  |||||||||||||||||||||||||||| |||||| |||||||  ||||||||||    
T  17662492 gtgcagtttcttatgcttctggccttccattggctttggaagtaataggttctcacttgtttgg 17662555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 71 - 134
Target Start/End: Original strand, 17713518 - 17713581
Alignment:
Q  71 gtgcagtaacttatgcttctggccttccattggctttagaagtagtaggttccaacttgtttgg 134  Q
    |||||||  |||||||||||||||||||||||||||| |||||| |||||||  ||||||||||    
T  17713518 gtgcagtttcttatgcttctggccttccattggctttggaagtaataggttctcacttgtttgg 17713581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 10 - 242
Target Start/End: Original strand, 16692027 - 16692259
Alignment:
Q  10 ttgaggtggaaggctttcaaaaataacaaggtcgattcaaatttcgatggtgttttgcgttgtgcagtaacttatgcttctggccttccattggctttag 109  Q
    |||||||||||| |||| ||||||||||| |||||||||| ||||||     ||||    | ||  |||||||||||||||||||||||||| |||||||    
T  16692027 ttgaggtggaagacttttaaaaataacaaagtcgattcaagtttcgagtacattttaaaatatgttgtaacttatgcttctggccttccattagctttag 16692126  T
Q  110 aagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcggtatgaaaggattccgattaaagagatccaagagatact 209  Q
    |||||||||| || |||||||||||||||||||||| ||| ||||||||| |||| ||||| |||||| |||||||   ||||   || ||  | |||||    
T  16692127 aagtagtaggatctaacttgtttggaaagaatatagaagaatggaaatctacatttgatcgatatgaatggattcctggtaaacgaattcacaaaatact 16692226  T
Q  210 taaagtaagctttgatgctttggagaaagatga 242  Q
    ||||||||| ||||||  ||||||| |||||||    
T  16692227 taaagtaagttttgatagtttggaggaagatga 16692259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 76 - 222
Target Start/End: Complemental strand, 5089906 - 5089760
Alignment:
Q  76 gtaacttatgcttctggccttccattggctttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcggtatg 175  Q
    |||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||| |||||| | | |||||||||  | |||||  |||||    
T  5089906 gtaacttatgcttctggccttccattggctttagaagttgtgggttccaatttgtttggaaaggatatagaaaaatggaaatctttactagatgagtatg 5089807  T
Q  176 aaaggattccgattaaagagatccaagagatacttaaagtaagcttt 222  Q
    |||||||||| | |||||| |||||| ||||||||| ||| ||||||    
T  5089806 aaaggattcctaataaagaaatccaaaagatacttatagtgagcttt 5089760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 82 - 233
Target Start/End: Complemental strand, 18678506 - 18678355
Alignment:
Q  82 tatgcttctggccttccattggctttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcggtatgaaagga 181  Q
    |||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||   ||| ||  | ||| ||||||||  ||||||||| |    
T  18678506 tatgcttctggccttccattagctatagaagtagtgggttccaacttgtttggaaagaatatttcagaatgtgagtctacattagataagtatgaaagaa 18678407  T
Q  182 ttccgattaaagagatccaagagatacttaaagtaagctttgatgctttgga 233  Q
    ||||   | |||| |||||| |||||||||||||||||||||||||||||||    
T  18678406 ttccacatgaagatatccaaaagatacttaaagtaagctttgatgctttgga 18678355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 82 - 232
Target Start/End: Complemental strand, 18723031 - 18722881
Alignment:
Q  82 tatgcttctggccttccattggctttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcggtatgaaagga 181  Q
    |||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||| ||| | ||| ||  | ||| ||||||||  ||||||||| |    
T  18723031 tatgcttctggccttccattagctatagaagtagtgggttccaacttgtttggaaagagtattgcagaatgtgagtctacattagatatgtatgaaagaa 18722932  T
Q  182 ttccgattaaagagatccaagagatacttaaagtaagctttgatgctttgg 232  Q
    ||||   | |||| |||||| ||||||||||||||||||||||||||||||    
T  18722931 ttccagatgaagatatccaaaagatacttaaagtaagctttgatgctttgg 18722881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 82 - 233
Target Start/End: Complemental strand, 18654423 - 18654272
Alignment:
Q  82 tatgcttctggccttccattggctttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcggtatgaaagga 181  Q
    |||||||||||||||||||| ||| ||||||| || |||||||||||||||||||||| ||| | ||| ||  ||||| ||||||||  ||||||||| |    
T  18654423 tatgcttctggccttccattagctatagaagtcgtgggttccaacttgtttggaaagagtattgcagaatgtgaatctacattagataagtatgaaagaa 18654324  T
Q  182 ttccgattaaagagatccaagagatacttaaagtaagctttgatgctttgga 233  Q
    ||||   | |||| |||||| |||||||||||||||| ||||||||||||||    
T  18654323 ttccacatgaagatatccaaaagatacttaaagtaagttttgatgctttgga 18654272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 82 - 233
Target Start/End: Complemental strand, 18698346 - 18698195
Alignment:
Q  82 tatgcttctggccttccattggctttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcggtatgaaagga 181  Q
    |||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||| | | | ||| ||  | ||| ||||||||  ||||||||| |    
T  18698346 tatgcttctggccttccattagctctagaagtagtgggttccaacttgtttggaaagagttttgcagaatgtgactctacattagataagtatgaaagaa 18698247  T
Q  182 ttccgattaaagagatccaagagatacttaaagtaagctttgatgctttgga 233  Q
    ||||   | |||| |||||| |||||||||||||||||||||||||||||||    
T  18698246 ttccacatgaagatatccaaaagatacttaaagtaagctttgatgctttgga 18698195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 82 - 233
Target Start/End: Complemental strand, 18730450 - 18730299
Alignment:
Q  82 tatgcttctggccttccattggctttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcggtatgaaagga 181  Q
    |||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||| | | | ||| ||  | ||| ||||||||  ||||||||| |    
T  18730450 tatgcttctggccttccattagctctagaagtagtgggttccaacttgtttggaaagagttttgcagaatgtgattctacattagataagtatgaaagaa 18730351  T
Q  182 ttccgattaaagagatccaagagatacttaaagtaagctttgatgctttgga 233  Q
    ||||   | |||| |||||| |||||||||||||||||||||||||||||||    
T  18730350 ttccacatgaagatatccaaaagatacttaaagtaagctttgatgctttgga 18730299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 82 - 233
Target Start/End: Complemental strand, 18688572 - 18688421
Alignment:
Q  82 tatgcttctggccttccattggctttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcggtatgaaagga 181  Q
    |||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||| |||   ||| ||  | ||| ||||||||  |||| |||| |    
T  18688572 tatgcttctggccttccattagctatagaagtagtgggttccaacttgtttggaaagagtatttcagaatgtgagtctacattagataagtatcaaagaa 18688473  T
Q  182 ttccgattaaagagatccaagagatacttaaagtaagctttgatgctttgga 233  Q
    |||| |   |||| |||||| |||||||||||||||||||||||||||||||    
T  18688472 ttccaaacgaagatatccaaaagatacttaaagtaagctttgatgctttgga 18688421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 80 - 245
Target Start/End: Original strand, 18074991 - 18075156
Alignment:
Q  80 cttatgcttctggccttccattggctttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcggtatgaaag 179  Q
    |||||||||||||||||||  | | | ||||| |||| ||||| ||||||||||||||||| |||| ||| || ||   | |||||||| |||||||||     
T  18074991 cttatgcttctggccttccggtagttatagaaatagtgggttctaacttgtttggaaagaacatagaagaatgcaagaatacattagattggtatgaaaa 18075090  T
Q  180 gattccgattaaagagatccaagagatacttaaagtaagctttgatgctttggagaaagatgagca 245  Q
    |||||| | |||||||||||||   ||||||||||| |||| |||| |||||||| |||| |||||    
T  18075091 gattcccaataaagagatccaaagaatacttaaagtgagctatgattctttggaggaagaggagca 18075156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 71 - 245
Target Start/End: Original strand, 35984520 - 35984694
Alignment:
Q  71 gtgcagtaacttatgcttctggccttccattggctttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcg 170  Q
    |||||||| | ||||||||||| ||||||||||||||   |||| |||||||||| || ||||||||||   ||  ||||||| ||||||||||| | ||    
T  35984520 gtgcagtagcatatgcttctggacttccattggctttgatagtaataggttccaatttatttggaaagacagtacaagagtgggaatctgcattacaccg 35984619  T
Q  171 gtatgaaaggattccgattaaagagatccaagagatacttaaagtaagctttgatgctttggagaaagatgagca 245  Q
    ||||||||  ||||| | |||||| |||||| |||||||||||||||| ||||||||||| ||| ||||||||||    
T  35984620 gtatgaaaccattcctaataaagacatccaaaagatacttaaagtaagttttgatgctttagaggaagatgagca 35984694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 71 - 243
Target Start/End: Original strand, 31906275 - 31906447
Alignment:
Q  71 gtgcagtaacttatgcttctggccttccattggctttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcg 170  Q
    ||||||||  |||||||||||| ||||||||||||||   |||  | |||||||| || |||||||||||||||  ||| ||| ||||||||||| ||||    
T  31906275 gtgcagtaggttatgcttctggacttccattggctttgatagttattggttccaatttatttggaaagaatatacaagaatgggaatctgcattacatcg 31906374  T
Q  171 gtatgaaaggattccgattaaagagatccaagagatacttaaagtaagctttgatgctttggagaaagatgag 243  Q
     |||||||  ||||| | ||||||||||||| | ||||| |||||||| ||||||||||||||| ||||||||    
T  31906375 atatgaaatcattccaaataaagagatccaaaatatactcaaagtaagttttgatgctttggaggaagatgag 31906447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 82 - 233
Target Start/End: Complemental strand, 29272788 - 29272637
Alignment:
Q  82 tatgcttctggccttccattggctttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcggtatgaaagga 181  Q
    |||||||| |||||||| || | ||||||| |||| ||||||||||||||||||||||  |||| ||| |||||   | |||||||| | ||||||| ||    
T  29272788 tatgcttcgggccttcccttagttttagaaatagtgggttccaacttgtttggaaagaggatagaagaatggaagggtacattagatggatatgaaaaga 29272689  T
Q  182 ttccgattaaagagatccaagagatacttaaagtaagctttgatgctttgga 233  Q
    |||| | ||||  ||||||  |||||||||||||||| | ||||||||||||    
T  29272688 ttcccaataaaaggatccaccagatacttaaagtaagttatgatgctttgga 29272637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 81 - 132
Target Start/End: Complemental strand, 16353906 - 16353855
Alignment:
Q  81 ttatgcttctggccttccattggctttagaagtagtaggttccaacttgttt 132  Q
    |||||||||  | |||||||||||||| |||||| |||||||||||||||||    
T  16353906 ttatgcttccaggcttccattggctttggaagtaataggttccaacttgttt 16353855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1870 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold1870
Description:

Target: scaffold1870; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 82 - 239
Target Start/End: Original strand, 1 - 158
Alignment:
Q  82 tatgcttctggccttccattggctttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcggtatgaaagga 181  Q
    |||||||| |||||||| || | ||||||| |||| ||||||||||||||||||||||  |||| ||| |||||   | |||||||| | ||||||| ||    
T  1 tatgcttcgggccttcccttagttttagaaatagtgggttccaacttgtttggaaagacgatagaagaatggaagggtacattagatggatatgaaaaga 100  T
Q  182 ttccgattaaagagatccaagagatacttaaagtaagctttgatgctttggagaaaga 239  Q
    |||| | |||| ||||||| ||||||||||||||||||| ||||||||||||| ||||    
T  101 ttcccaataaaaagatccacgagatacttaaagtaagctatgatgctttggaggaaga 158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 82 - 239
Target Start/End: Complemental strand, 12625 - 12468
Alignment:
Q  82 tatgcttctggccttccattggctttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcggtatgaaagga 181  Q
    |||||||| |||||||| || | ||||||| |||| ||||||||||||||||||||||  |||| ||| |||||   | |||||||| | ||||||| ||    
T  12625 tatgcttcgggccttcccttagttttagaaatagtgggttccaacttgtttggaaagacgatagaagaatggaagggtacattagatggatatgaaaaga 12526  T
Q  182 ttccgattaaagagatccaagagatacttaaagtaagctttgatgctttggagaaaga 239  Q
    |||| | |||| ||||||| ||||||||||||||||||| ||||||||||||| ||||    
T  12525 ttcccaataaaaagatccacgagatacttaaagtaagctatgatgctttggaggaaga 12468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 82 - 239
Target Start/End: Complemental strand, 3662 - 3505
Alignment:
Q  82 tatgcttctggccttccattggctttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcggtatgaaagga 181  Q
    |||||||| |||||||| || | ||||||| |||| ||||||||||||||||||||||  |||| ||| |||||   | |||||||| | ||||||| ||    
T  3662 tatgcttcgggccttcccttagttttagaaatagtgggttccaacttgtttggaaagacgatagaagaatggaagggtacattagatggatatgaaaaga 3563  T
Q  182 ttccgattaaagagatccaagagatacttaaagtaagctttgatgctttggagaaaga 239  Q
    |||| | |||| |||||||  |||||||||||||||||| ||||||||||||| ||||    
T  3562 ttcccaataaaaagatccaccagatacttaaagtaagctatgatgctttggaggaaga 3505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 82 - 239
Target Start/End: Original strand, 8719 - 8876
Alignment:
Q  82 tatgcttctggccttccattggctttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcggtatgaaagga 181  Q
    |||||||| |||||||| || | ||||||| |||| ||||||||||||||||||||||  |||| ||| |||||   | |||||||| | ||||||| ||    
T  8719 tatgcttcgggccttcccttagttttagaaatagtgggttccaacttgtttggaaagacgatagaagaatggaagggtacattagatggatatgaaaaga 8818  T
Q  182 ttccgattaaagagatccaagagatacttaaagtaagctttgatgctttggagaaaga 239  Q
    |||| | |||| ||||||| ||||||||||||||||| | ||||||||||||| ||||    
T  8819 ttcccaataaaaagatccacgagatacttaaagtaagttatgatgctttggaggaaga 8876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 71 - 246
Target Start/End: Complemental strand, 267301 - 267126
Alignment:
Q  71 gtgcagtaacttatgcttctggccttccattggctttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcg 170  Q
    |||||||  ||||||||||||||||||| || | ||||||| | || ||||| ||||||||||||||||  |||| ||| |||||   | |||||||| |    
T  267301 gtgcagttgcttatgcttctggccttccgttagttttagaaattgtgggttctaacttgtttggaaagagcatagaagaatggaagggtacattagatgg 267202  T
Q  171 gtatgaaaggattccgattaaagagatccaagagatacttaaagtaagctttgatgctttggagaaagatgagcag 246  Q
    |||||| | |||||| | ||||||||||||| ||||||||||||| |||| ||||| ||||||  |||| ||||||    
T  267201 gtatgataagattcccaataaagagatccaaaagatacttaaagtgagctatgatggtttggaagaagaggagcag 267126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 82 - 245
Target Start/End: Complemental strand, 28126625 - 28126462
Alignment:
Q  82 tatgcttctggccttccattggctttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcggtatgaaagga 181  Q
    |||||||| |||||||| || | | ||||| |||| ||||||||||| ||||||||||  |||| ||| |||||   | |||||||| | ||||||| ||    
T  28126625 tatgcttcaggccttcccttagttatagaaatagtgggttccaacttatttggaaagagcatagaagaatggaagggtacattagatggatatgaaaaga 28126526  T
Q  182 ttccgattaaagagatccaagagatacttaaagtaagctttgatgctttggagaaagatgagca 245  Q
    |||| | |||| |||||||||||||| ||||| |||||| ||||||||||||| ||||||||||    
T  28126525 ttccaaataaaaagatccaagagatatttaaactaagctatgatgctttggaggaagatgagca 28126462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 82 - 233
Target Start/End: Original strand, 26137120 - 26137271
Alignment:
Q  82 tatgcttctggccttccattggctttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcggtatgaaagga 181  Q
    ||||||||||||||||| || |||||||||||||| ||||||| |||||||||||||  || |  ||| ||| ||||| ||||| |   |||||||||||    
T  26137120 tatgcttctggccttccgttagctttagaagtagtgggttccagcttgtttggaaagtgtacaacagaatgggaatctacattacagaagtatgaaagga 26137219  T
Q  182 ttccgattaaagagatccaagagatacttaaagtaagctttgatgctttgga 233  Q
    ||||   | |||| |||||| | ||||||| |||||||| ||||||||||||    
T  26137220 ttccacatgaagatatccaaaacatacttagagtaagctatgatgctttgga 26137271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 107 - 245
Target Start/End: Complemental strand, 28132426 - 28132288
Alignment:
Q  107 tagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcggtatgaaaggattccgattaaagagatccaagagat 206  Q
    ||||| |||| ||||| ||||| ||||||||||  |||| ||| ||||| | | |||||||| | ||||||| |||||| | |||| ||||||| |||||    
T  28132426 tagaaatagtgggttcaaacttatttggaaagagcatagaagaatggaagtgtacattagatggatatgaaaagattcctaataaaaagatccatgagat 28132327  T
Q  207 acttaaagtaagctttgatgctttggagaaagatgagca 245  Q
    | |||||||||| |  |||||||||||| |||| |||||    
T  28132326 atttaaagtaagttacgatgctttggaggaagaggagca 28132288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 233
Target Start/End: Complemental strand, 5922418 - 5922268
Alignment:
Q  83 atgcttctggccttccattggctttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcggtatgaaaggat 182  Q
    |||||||||||||||| ||||||||||||||| |||||||  |||| |||   || |   ||| | | || |||||| |||||||||| |||||||||||    
T  5922418 atgcttctggccttcctttggctttagaagtaataggttctcacttatttcataaaacagtagaacaatgtaaatctacattagatcgttatgaaaggat 5922319  T
Q  183 tccgattaaagagatccaagagatacttaaagtaagctttgatgctttgga 233  Q
    |||   |||| |||| |||  | | || ||||| |||||||||||||||||    
T  5922318 tcctgataaaaagatgcaaacgttgctaaaagtgagctttgatgctttgga 5922268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 82 - 239
Target Start/End: Complemental strand, 2489 - 2332
Alignment:
Q  82 tatgcttctggccttccattggctttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcggtatgaaagga 181  Q
    ||||||||||||||||| || | | ||||| |||| ||||| ||||| | ||||||||| ||||  || |||||   | |||||||| ||||||| ||||    
T  2489 tatgcttctggccttccgttagttatagaaatagtgggttctaacttatctggaaagaacatagaggaatggaagaatacattagatgggtatgacagga 2390  T
Q  182 ttccgattaaagagatccaagagatacttaaagtaagctttgatgctttggagaaaga 239  Q
    |||| | ||||||||||||| |||||||||||||||| | ||||||||||||| ||||    
T  2389 ttcccaataaagagatccaaaagatacttaaagtaagttatgatgctttggaggaaga 2332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 80 - 245
Target Start/End: Original strand, 60799 - 60964
Alignment:
Q  80 cttatgcttctggccttccattggctttagaagtagtaggttccaacttgtttggaaagaatataggagagtggaaatctgcattagatcggtatgaaag 179  Q
    |||||||||||||||||||  | | | ||||| |||| ||||| ||||||||||||||||| |||| ||| || ||   | |||||||| |||||||||     
T  60799 cttatgcttctggccttccggtagttatagaaatagtgggttctaacttgtttggaaagaacatagaagaatgcaagaatacattagattggtatgaaaa 60898  T
Q  180 gattccgattaaagagatccaagagatacttaaagtaagctttgatgctttggagaaagatgagca 245  Q
    |||||| | |||||||||||||   ||||||||||| |||| |||| |||||||| |||| |||||    
T  60899 gattcccaataaagagatccaaagaatacttaaagtgagctatgattctttggaggaagaggagca 60964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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