View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14994_low_17 (Length: 231)

Name: NF14994_low_17
Description: NF14994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14994_low_17
NF14994_low_17
[»] scaffold0003 (1 HSPs)
scaffold0003 (17-231)||(9058-9270)
[»] chr7 (1 HSPs)
chr7 (17-231)||(16420346-16420558)
[»] chr8 (1 HSPs)
chr8 (17-224)||(5538207-5538411)
[»] chr3 (1 HSPs)
chr3 (132-231)||(19932354-19932453)
[»] chr6 (2 HSPs)
chr6 (21-97)||(3508678-3508754)
chr6 (43-82)||(34518720-34518759)
[»] chr5 (1 HSPs)
chr5 (132-206)||(37940370-37940444)
[»] chr1 (2 HSPs)
chr1 (132-199)||(18901605-18901672)
chr1 (132-203)||(51784714-51784783)
[»] scaffold0004 (1 HSPs)
scaffold0004 (20-82)||(188988-189055)
[»] chr2 (2 HSPs)
chr2 (30-67)||(2038088-2038125)
chr2 (20-52)||(29963974-29964006)


Alignment Details
Target: scaffold0003 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 17 - 231
Target Start/End: Complemental strand, 9270 - 9058
Alignment:
Q  17 actccctttcccgttctctttctctttctcactatgtattttgtttttgttcttcaaagtatagaaaggggtgtgtgtgaagnnnnnnnnnggaaccggt 116  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||    
T  9270 actccctttcccattctctttctctttctcactatgtattttgtttttgttcttcaaagtatagaaaggggtgtgtgtgaa--aaagaataggaaccggt 9173  T
Q  117 tactaataattctcccactaacttatttcctaacaatatggaacatagtggaaaatgggattgggaagaaacgtggatgtttatttccacatgccaatca 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  9172 tactaataattctcccactaacttatttcctaacaatatggaacatagtggaaaatgggattgggaagaaacgtggatctttatttccacacgccaatca 9073  T
Q  217 cttcctttgctctat 231  Q
    |||||||||||||||    
T  9072 cttcctttgctctat 9058  T

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Target: chr7 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 17 - 231
Target Start/End: Complemental strand, 16420558 - 16420346
Alignment:
Q  17 actccctttcccgttctctttctctttctcactatgtattttgtttttgttcttcaaagtatagaaaggggtgtgtgtgaagnnnnnnnnnggaaccggt 116  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||    
T  16420558 actccctttcccattctctttctctttctcactatgtattttgtttttgttcttcaaagtatagaaaggggtgtgtgtgaa--aaagaataggaaccggt 16420461  T
Q  117 tactaataattctcccactaacttatttcctaacaatatggaacatagtggaaaatgggattgggaagaaacgtggatgtttatttccacatgccaatca 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  16420460 tactaataattctcccactaacttatttcctaacaatatggaacatagtggaaaatgggattgggaagaaacgtggatctttatttccacacgccaatca 16420361  T
Q  217 cttcctttgctctat 231  Q
    |||||||||||||||    
T  16420360 cttcctttgctctat 16420346  T

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Target: chr8 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 17 - 224
Target Start/End: Original strand, 5538207 - 5538411
Alignment:
Q  17 actccctttcccgttctctttctctttctcactatgtattttgtttttgttcttcaaagtatagaaaggggtgtgtgtgaagnnnnnnnnnggaaccggt 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||| |||    
T  5538207 actccctttcccgttctctttctctttctcactatgtattttgtttttgttcttcaaagtatagaaaggggtgtgtgtgaa--aaggaataggaactggt 5538304  T
Q  117 tactaataattctcccactaacttatttcctaacaatatggaacatagtggaaaatgggattgggaagaaacgtggatgtttatttccacatgccaatca 216  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  5538305 tactaataattctcccactagcttatttcctaacaatatgggacatagtggaaaatgggattgggaagaaacgtggatgtttatttccacacg-caatca 5538403  T
Q  217 cttccttt 224  Q
    ||||||||    
T  5538404 cttccttt 5538411  T

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Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 132 - 231
Target Start/End: Complemental strand, 19932453 - 19932354
Alignment:
Q  132 cactaacttatttcctaacaatatggaacatagtggaaaatgggattgggaagaaacgtggatgtttatttccacatgccaatcacttcctttgctctat 231  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||| ||||||| ||||||    
T  19932453 cactaacttatttcctaaaaatatggaacatagtggaaaatgggattgggaagaaacgtggatgtttatttccactagtcaatcagttccttttctctat 19932354  T

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Target: chr6 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 3508754 - 3508678
Alignment:
Q  21 cctttcccgttctctttctctttctcactatgtattttgtttttgttcttcaaagtatagaaaggggtgtgtgtgaa 97  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3508754 cctttcctattctctttctctttctcactatgtattttgtttttgttcttcaaagtatagaaaggggtgtgtgtgaa 3508678  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 82
Target Start/End: Original strand, 34518720 - 34518759
Alignment:
Q  43 tctcactatgtattttgtttttgttcttcaaagtatagaa 82  Q
    |||| |||||||||||| ||||||||||||||||||||||    
T  34518720 tctctctatgtattttgattttgttcttcaaagtatagaa 34518759  T

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Target: chr5 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 37940370 - 37940444
Alignment:
Q  132 cactaacttatttcctaacaatatggaacatagtggaaaatgggattgggaagaaacgtggatgtttatttccac 206  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  37940370 cactaacttatttcctaaaaatatggaacatagtggaaaatgagattgggaagaaacgtggatgtttatttccac 37940444  T

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Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 132 - 199
Target Start/End: Complemental strand, 18901672 - 18901605
Alignment:
Q  132 cactaacttatttcctaacaatatggaacatagtggaaaatgggattgggaagaaacgtggatgttta 199  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  18901672 cactaacttatttcctaaaaatatggaacatagtggaaaatgggattgggaagaaacgtggatgttta 18901605  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 132 - 203
Target Start/End: Original strand, 51784714 - 51784783
Alignment:
Q  132 cactaacttatttcctaacaatatggaacatagtggaaaatgggattgggaagaaacgtggatgtttatttc 203  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  51784714 cactaacttatttcctaaaaatatggaacatagtggaaaatgggattgggaagaaacgt--atgtttatttc 51784783  T

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Target: scaffold0004 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 188988 - 189055
Alignment:
Q  20 ccctttcccgttctctttctctttctcactatgtattttgttttt-----gttcttcaaagtatagaa 82  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||     ||||||||||||||||||    
T  188988 ccctttcccgttccctttctctttctccctatgtattttgtttttgttttgttcttcaaagtatagaa 189055  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 67
Target Start/End: Complemental strand, 2038125 - 2038088
Alignment:
Q  30 ttctctttctctttctcactatgtattttgtttttgtt 67  Q
    ||||||||||||||||  ||||||||||||||||||||    
T  2038125 ttctctttctctttcttcctatgtattttgtttttgtt 2038088  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 29963974 - 29964006
Alignment:
Q  20 ccctttcccgttctctttctctttctcactatg 52  Q
    ||||||||||||||||||||||||||| |||||    
T  29963974 ccctttcccgttctctttctctttctccctatg 29964006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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