View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14994_low_18 (Length: 228)
Name: NF14994_low_18
Description: NF14994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14994_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 129; Significance: 6e-67; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 82 - 210
Target Start/End: Complemental strand, 47712335 - 47712207
Alignment:
| Q |
82 |
ctaacatgccttgtatcatgtttgaagaaatagaagaaaatgataatgatgatattgaaatcgctgagtcatttctattcaacttcgagacattacgagt |
181 |
Q |
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| T |
47712335 |
ctaacatgccttgtatcatgtttgaagaaatagaagaaaatgataatgatgatattgaaatcgctgagtcatttctattcaacttcgagacattacgagt |
47712236 |
T |
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| Q |
182 |
tgctacagggaacttttctgaagctaata |
210 |
Q |
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| T |
47712235 |
tgctacagggaacttttctgaagctaata |
47712207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 82 - 210
Target Start/End: Complemental strand, 47717087 - 47716962
Alignment:
| Q |
82 |
ctaacatgccttgtatcatgtttgaagaaatagaagaaaatgataatgatgatattgaaatcgctgagtcatttctattcaacttcgagacattacgagt |
181 |
Q |
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||||||||||||||| |||||||||| |||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
47717087 |
ctaacatgccttgtacattgtttgaagatatagaaga---tgataataatgatattgaaatcgctgagtcattgctattcaacttcgagacattacgagt |
47716991 |
T |
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| Q |
182 |
tgctacagggaacttttctgaagctaata |
210 |
Q |
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||||||| | ||||||||||||||||||| |
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| T |
47716990 |
tgctacaagtaacttttctgaagctaata |
47716962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 82 - 210
Target Start/End: Complemental strand, 47744883 - 47744755
Alignment:
| Q |
82 |
ctaacatgccttgtatcatgtttgaagaaatagaagaaaatgataatgatgatattgaaatcgctgagtcatttctattcaacttcgagacattacgagt |
181 |
Q |
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||||||||||||||| ||||||||||| ||| ||||| |||| ||| |||||||||||||| ||| |||||| |||||||||||||||||||||||||| |
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| T |
47744883 |
ctaacatgccttgtacaatgtttgaagatataaaagaagatgaaaataatgatattgaaatcactgcgtcattgctattcaacttcgagacattacgagt |
47744784 |
T |
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| Q |
182 |
tgctacagggaacttttctgaagctaata |
210 |
Q |
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||||||| | ||||||||||||| ||||| |
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| T |
47744783 |
tgctacaagtaacttttctgaagataata |
47744755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 82 - 210
Target Start/End: Complemental strand, 47759233 - 47759105
Alignment:
| Q |
82 |
ctaacatgccttgtatcatgtttgaagaaatagaagaaaatgataatgatgatattgaaatcgctgagtcatttctattcaacttcgagacattacgagt |
181 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||| | || |||||||||||||| || ||||||||||| | ||||||||| |||||||||| ||| |
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| T |
47759233 |
ctaacatgccttgtatcatttttgaagaaatcgaagaagacgacaatgatgatattgacatggctgagtcattgcaattcaactttgagacattacaagt |
47759134 |
T |
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| Q |
182 |
tgctacagggaacttttctgaagctaata |
210 |
Q |
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||||||| | ||||||||||||||||||| |
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| T |
47759133 |
tgctacaagtaacttttctgaagctaata |
47759105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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