View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14994_low_2 (Length: 544)
Name: NF14994_low_2
Description: NF14994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14994_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 436; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 20 - 526
Target Start/End: Original strand, 13308179 - 13308685
Alignment:
| Q |
20 |
cttgcaacacaaaaccccttctctgtttccctttcaatcnnnnnnnnnnnnnnnnnattaatcaacaacgtcaagtcggactcattatctttcaacttcc |
119 |
Q |
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| T |
13308179 |
cttgcaacacaaaaccccttctctgtttccctttcaatcttcttctttttacttttgttaatcaacaacgtcaagtcggactcattatctttcaacttcc |
13308278 |
T |
|
| Q |
120 |
ccaaattcgataccgatgccctaaacattgtcatcgacggtgatgccaaaacaacaggtggagtactacaattgaccaaaaaggaccaatttggcaatcc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
13308279 |
ccaaattcgataccgatgccctaaacattgtcatcgacggtgatgccaaaacaacaggtggagtactacaattgactaaaaaggaccaatttggcaatcc |
13308378 |
T |
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| Q |
220 |
atctccacatagtgttggcttttccgcattcttcggagctattcaactctccgataaacaaagtggtaaagtcgctgacttcaccaccgagttttccttt |
319 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13308379 |
atctccacatagtgttggcttctccgcattcttcggagctattcaactctccgataaacaaagtggtaaagtcgctgacttcaccaccgagttttccttt |
13308478 |
T |
|
| Q |
320 |
gttgtgaatccaaagggttcacaacttcacggagatggtttcgcattctatatagcatcattagattacgattttcccgaaaattcatcggatggtggat |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
13308479 |
gttgtgaatccaaagggttcacaacttcacggagatggtttcgcattctatatagcatcattagattatgattttcccgaaaaatcatcggatggtggat |
13308578 |
T |
|
| Q |
420 |
tccttggactttttgataaagaaactgccttcaatacctccaaaaactcaatcgttgccgtcgagtttgatagttttgcaaatgaatgggaccctaactc |
519 |
Q |
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| T |
13308579 |
tccttggactttttgataaagaaactgccttcaatacctccaaaaactcaatcgttgccgtcgagtttgatagttttgcaaatgaatgggaccctaactc |
13308678 |
T |
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| Q |
520 |
acctcat |
526 |
Q |
| |
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||||||| |
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| T |
13308679 |
acctcat |
13308685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 77 - 510
Target Start/End: Original strand, 13333392 - 13333825
Alignment:
| Q |
77 |
ttaatcaacaacgtcaagtcggactcattatctttcaacttccccaaattcgataccgatgccctaaacattgtcatcgacggtgatgccaaaacaacag |
176 |
Q |
| |
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||||||| ||| ||||| || |||||||| |||||||||||||||||||| || |||||| | || ||| | || || ||||||||||| ||||| |
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| T |
13333392 |
ttaatcaccaatgtcaaatcagactcattttctttcaacttccccaaatttgacaccgatactaaaagcatcattattgatggtgatgccaacacaacga |
13333491 |
T |
|
| Q |
177 |
gtggagtactacaattgaccaaaaaggaccaatttggcaatccatctccacatagtgttggcttttccgcattcttcggagctattcaactctccgataa |
276 |
Q |
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||||||||||||||| || |||||||||||| ||||||| ||||||||||| ||| ||||| | ||| ||||| ||||| || || || || ||||| |
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| T |
13333492 |
atggagtactacaattaactaaaaaggaccaacttggcaacccatctccacacagttttggcctctccttcttcttgggagccatccacctttctgataa |
13333591 |
T |
|
| Q |
277 |
acaaagtggtaaagtcgctgacttcaccaccgagttttcctttgttgtgaatccaaagggttcacaacttcacggagatggtttcgcattctatatagca |
376 |
Q |
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|||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| || || |||||| |||||| ||| ||| |
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| T |
13333592 |
acaaagtggtgaagtcgctgactttaccaccgagttttcctttgttgtgaatccaaaaggttcacaacttcatggtgacggtttcacattctttatcgca |
13333691 |
T |
|
| Q |
377 |
tcattagattacgattttcccgaaaattcatcggatggtggattccttggactttttgataaagaaactgccttcaatacctccaaaaactcaatcgttg |
476 |
Q |
| |
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|| |||||||| || || || || || ||||| ||||||||||||||||||||||| ||||||||| | || |||||||||||| ||||||| || |||| |
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| T |
13333692 |
tcgttagattatgagttcccagagaaatcatccgatggtggattccttggacttttcgataaagaatccgcgttcaatacctcccaaaactccattgttg |
13333791 |
T |
|
| Q |
477 |
ccgtcgagtttgatagttttgcaaatgaatggga |
510 |
Q |
| |
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| || ||||||||||||||| |||||||||||| |
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| T |
13333792 |
cggttgagtttgatagttttagaaatgaatggga |
13333825 |
T |
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