View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14994_low_20 (Length: 220)
Name: NF14994_low_20
Description: NF14994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14994_low_20 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 4 - 220
Target Start/End: Complemental strand, 13308854 - 13308638
Alignment:
| Q |
4 |
caataacatcaactttggcaggactatttggataagttacaaacacactcaagtcttttgaggcagtattataacttatgcgagcctttcctatcgttcc |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13308854 |
caataacatcaactttggcaggactatttggataagttacaaatacactcaagtcttttgaggcagtattataacttatgcgagcctttcctatcgttcc |
13308755 |
T |
|
| Q |
104 |
ttgaggttgacgatcgattggccatggaacactgatcgaagactcaatcgtgttgatgtcaattcctatatgaggtgagttagggtcccattcctttgca |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
13308754 |
ttgaggttgacgatcgattggccatggaacactgatcgaagactcaatcgtgttgatgtcaattcctatatgaggtgagttagggtcccattcatttgca |
13308655 |
T |
|
| Q |
204 |
aaactatcaaactcgac |
220 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
13308654 |
aaactatcaaactcgac |
13308638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 22 - 185
Target Start/End: Complemental strand, 13334004 - 13333841
Alignment:
| Q |
22 |
caggactatttggataagttacaaacacactcaagtcttttgaggcagtattataacttatgcgagcctttcctatcgttccttgaggttgacgatcgat |
121 |
Q |
| |
|
|||||| |||| |||||||||| | | || |||| | ||| ||||||| ||||||||||||| | ||||||||||||| ||||| ||| ||||||||| |
|
|
| T |
13334004 |
caggaccatttagataagttaccagcgcagtcaattttttcgaggcaggattataacttatgtgtgcctttcctatcgatccttctggtacacgatcgat |
13333905 |
T |
|
| Q |
122 |
tggccatggaacactgatcgaagactcaatcgtgttgatgtcaattcctatatgaggtgagtta |
185 |
Q |
| |
|
||||||| || || | |||||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
13333904 |
tggccatagagcagtagctgaagacctaatcgtgttgatgtcgattcctatatgaggtgagtta |
13333841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University