View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14994_low_5 (Length: 458)

Name: NF14994_low_5
Description: NF14994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14994_low_5
NF14994_low_5
[»] chr8 (15 HSPs)
chr8 (94-270)||(18849565-18849741)
chr8 (334-455)||(18873514-18873627)
chr8 (92-137)||(12492425-12492470)
chr8 (92-211)||(36544806-36544937)
chr8 (92-137)||(36565824-36565869)
chr8 (95-137)||(42854587-42854629)
chr8 (92-137)||(4033077-4033122)
chr8 (92-134)||(15215856-15215898)
chr8 (98-137)||(13984695-13984734)
chr8 (92-135)||(45332072-45332115)
chr8 (100-137)||(8880017-8880054)
chr8 (99-134)||(25985201-25985236)
chr8 (95-137)||(41444887-41444929)
chr8 (92-134)||(43732230-43732272)
chr8 (148-207)||(25439253-25439317)
[»] scaffold0005 (1 HSPs)
scaffold0005 (322-455)||(184016-184141)
[»] chr4 (19 HSPs)
chr4 (322-455)||(14633151-14633276)
chr4 (92-211)||(435883-436014)
chr4 (92-173)||(48174633-48174721)
chr4 (92-137)||(23906884-23906929)
chr4 (92-137)||(33226863-33226908)
chr4 (92-173)||(47265744-47265832)
chr4 (92-134)||(50286625-50286667)
chr4 (92-211)||(1777512-1777643)
chr4 (92-211)||(27450670-27450801)
chr4 (92-137)||(31960397-31960442)
chr4 (92-137)||(56374944-56374989)
chr4 (92-137)||(10776002-10776047)
chr4 (92-137)||(53707448-53707493)
chr4 (92-132)||(30807252-30807292)
chr4 (92-211)||(16002583-16002713)
chr4 (92-137)||(48623110-48623155)
chr4 (98-137)||(41427499-41427538)
chr4 (98-137)||(42037521-42037560)
chr4 (142-176)||(41009890-41009924)
[»] scaffold0186 (1 HSPs)
scaffold0186 (334-455)||(8024-8137)
[»] chr5 (14 HSPs)
chr5 (92-211)||(3394364-3394495)
chr5 (92-211)||(1288086-1288217)
chr5 (92-137)||(1274919-1274964)
chr5 (92-137)||(2076057-2076102)
chr5 (92-137)||(3301503-3301548)
chr5 (92-137)||(12492970-12493015)
chr5 (92-137)||(16347985-16348030)
chr5 (92-137)||(20318645-20318690)
chr5 (92-137)||(10638951-10638996)
chr5 (92-137)||(28977440-28977485)
chr5 (92-137)||(24178178-24178223)
chr5 (92-137)||(43558397-43558442)
chr5 (93-137)||(27302530-27302574)
chr5 (92-137)||(38579084-38579129)
[»] chr2 (16 HSPs)
chr2 (92-211)||(11992603-11992734)
chr2 (92-137)||(2610182-2610227)
chr2 (93-137)||(452205-452249)
chr2 (92-136)||(13148967-13149011)
chr2 (92-137)||(4807246-4807291)
chr2 (92-211)||(8180434-8180565)
chr2 (92-137)||(38453203-38453248)
chr2 (92-137)||(24584189-24584234)
chr2 (92-137)||(30743277-30743322)
chr2 (92-179)||(41763583-41763677)
chr2 (92-137)||(14769944-14769989)
chr2 (92-180)||(37281763-37281858)
chr2 (92-137)||(45368207-45368251)
chr2 (94-134)||(12904624-12904664)
chr2 (92-134)||(876786-876828)
chr2 (105-137)||(3244234-3244266)
[»] chr3 (14 HSPs)
chr3 (92-207)||(25191033-25191160)
chr3 (92-137)||(51448292-51448337)
chr3 (92-137)||(52138482-52138527)
chr3 (92-179)||(19736820-19736910)
chr3 (92-173)||(38849748-38849836)
chr3 (92-137)||(19757722-19757767)
chr3 (92-137)||(27917226-27917271)
chr3 (92-137)||(47542294-47542339)
chr3 (96-179)||(26489975-26490065)
chr3 (94-137)||(28245093-28245136)
chr3 (100-137)||(9258541-9258578)
chr3 (92-137)||(29817159-29817204)
chr3 (92-137)||(48221438-48221483)
chr3 (115-179)||(54425440-54425511)
[»] scaffold0570 (1 HSPs)
scaffold0570 (92-137)||(2853-2898)
[»] scaffold0171 (1 HSPs)
scaffold0171 (92-137)||(5846-5891)
[»] chr7 (18 HSPs)
chr7 (92-137)||(32630261-32630306)
chr7 (92-211)||(33350303-33350434)
chr7 (92-137)||(46356434-46356479)
chr7 (92-210)||(38606659-38606789)
chr7 (93-179)||(24177729-24177822)
chr7 (92-137)||(36651648-36651693)
chr7 (92-137)||(49028921-49028966)
chr7 (95-137)||(37616573-37616615)
chr7 (92-137)||(11593614-11593659)
chr7 (92-137)||(31004878-31004922)
chr7 (92-137)||(39906962-39907007)
chr7 (92-137)||(36869872-36869917)
chr7 (96-211)||(48919046-48919173)
chr7 (148-211)||(43281393-43281461)
chr7 (92-137)||(18608273-18608318)
chr7 (92-137)||(18626560-18626605)
chr7 (92-137)||(18637234-18637279)
chr7 (92-137)||(18650669-18650714)
[»] chr6 (8 HSPs)
chr6 (92-211)||(5258647-5258778)
chr6 (92-137)||(9706430-9706475)
chr6 (92-137)||(10100440-10100485)
chr6 (92-207)||(5631471-5631599)
chr6 (92-211)||(20428133-20428264)
chr6 (95-134)||(2689313-2689352)
chr6 (25-63)||(28732452-28732490)
chr6 (92-137)||(3632670-3632715)
[»] chr1 (18 HSPs)
chr1 (92-211)||(32083242-32083373)
chr1 (96-211)||(34827599-34827726)
chr1 (92-137)||(43240964-43241009)
chr1 (92-137)||(51601712-51601757)
chr1 (91-211)||(19936174-19936307)
chr1 (92-137)||(1210399-1210444)
chr1 (92-137)||(8671574-8671619)
chr1 (92-137)||(51441347-51441392)
chr1 (92-137)||(49347976-49348022)
chr1 (92-137)||(40419335-40419380)
chr1 (92-179)||(27445552-27445646)
chr1 (92-178)||(37463400-37463493)
chr1 (92-137)||(28528235-28528280)
chr1 (92-137)||(6640780-6640825)
chr1 (92-137)||(7921581-7921626)
chr1 (92-121)||(32405083-32405112)
chr1 (92-137)||(46226895-46226940)
chr1 (139-179)||(35828927-35828967)
[»] scaffold0024 (1 HSPs)
scaffold0024 (92-179)||(82375-82469)
[»] scaffold0113 (1 HSPs)
scaffold0113 (92-173)||(12138-12226)
[»] scaffold0018 (1 HSPs)
scaffold0018 (92-137)||(31122-31167)


Alignment Details
Target: chr8 (Bit Score: 145; Significance: 4e-76; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 94 - 270
Target Start/End: Complemental strand, 18849741 - 18849565
Alignment:
Q  94 ttggagatcatatcataccccaagttacacggtttaaatatcttcagtataaagtgacggagaaatagaagcaaatgtaaatcatccaagctgaatggtt 193  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  18849741 ttggagatcatatcataccccaagttacacggtttaaatatctttagtataaagtgacggagaaatagaagcaaatgtaaatcatccaagctgggtggtt 18849642  T
Q  194 gaaatggataagagcctccggtaccgctcccttcctcgaacttcctctactgcctccaccaccgttgttctacttct 270  Q
    |||||||||||||| |||| | |||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  18849641 gaaatggataagagtctccagcaccgcttccttcctcgaacttcctctacttcctccaccaccgttgttctacttct 18849565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 334 - 455
Target Start/End: Complemental strand, 18873627 - 18873514
Alignment:
Q  334 acacatttgggtttgttgacattgctttgatcccttttcatagttggttttattactttatacttatgagaaattatgtaacttcaaagtggaggaagag 433  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||        ||||||||||||||||| ||||||||||| |||||||||    
T  18873627 acacatttgggtttgttgacattgctttgatccctttctatagttggttttat--------acttatgagaaattatgcaacttcaaagttgaggaagag 18873536  T
Q  434 tgtgataagttgattgcttggg 455  Q
    ||||| ||| |||||| |||||    
T  18873535 tgtgaaaagctgattgtttggg 18873514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 12492470 - 12492425
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  12492470 agttggagatcatatcataccccaagttacacggtttaaatatctt 12492425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 92 - 211
Target Start/End: Original strand, 36544806 - 36544937
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatat-------cttcagtataaagtgacggagaaatagaagcaaatgtaaatcatc----- 179  Q
    ||||||||||||||||||||||||||||||| |||||||||||       |||  ||| ||| ||||||||||||||||||| |||||| |||||         
T  36544806 agttggagatcatatcataccccaagttacaaggtttaaatatcatggggctttcgtacaaaatgacggagaaatagaagcagatgtaagtcatcgtatt 36544905  T
Q  180 caagctgaatggttgaaatggataagagcctc 211  Q
    |||| ||  |||||||||||||||||||||||    
T  36544906 caagttgggtggttgaaatggataagagcctc 36544937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 36565869 - 36565824
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  36565869 agttggagatcatatcataccccaagttacacggtttaaatatctt 36565824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 95 - 137
Target Start/End: Complemental strand, 42854629 - 42854587
Alignment:
Q  95 tggagatcatatcataccccaagttacacggtttaaatatctt 137  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  42854629 tggagatcatatcataccccaagttacacggtttaaatatctt 42854587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 4033122 - 4033077
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt 137  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||    
T  4033122 agttggagatcatatcataccccaagttacacggtttaagtatctt 4033077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 92 - 134
Target Start/End: Complemental strand, 15215898 - 15215856
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatat 134  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  15215898 agttggagatcatatcatacccaaagttacacggtttaaatat 15215856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 98 - 137
Target Start/End: Original strand, 13984695 - 13984734
Alignment:
Q  98 agatcatatcataccccaagttacacggtttaaatatctt 137  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  13984695 agatcatatcataccccaagatacacggtttaaatatctt 13984734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 92 - 135
Target Start/End: Complemental strand, 45332115 - 45332072
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatc 135  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||    
T  45332115 agttggagatcatgtcataccacaagttacacggtttaaatatc 45332072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 100 - 137
Target Start/End: Complemental strand, 8880054 - 8880017
Alignment:
Q  100 atcatatcataccccaagttacacggtttaaatatctt 137  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  8880054 atcatatcatatcccaagttacacggtttaaatatctt 8880017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 134
Target Start/End: Original strand, 25985201 - 25985236
Alignment:
Q  99 gatcatatcataccccaagttacacggtttaaatat 134  Q
    |||||||||||||| |||||||||||||||||||||    
T  25985201 gatcatatcataccacaagttacacggtttaaatat 25985236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 137
Target Start/End: Complemental strand, 41444929 - 41444887
Alignment:
Q  95 tggagatcatatcataccccaagttacacggtttaaatatctt 137  Q
    |||||||||||||||||| ||||||||  ||||||||||||||    
T  41444929 tggagatcatatcataccacaagttacttggtttaaatatctt 41444887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 134
Target Start/End: Complemental strand, 43732272 - 43732230
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatat 134  Q
    ||||||||||||||||||| | ||||| |||||||||||||||    
T  43732272 agttggagatcatatcatagcacaagtaacacggtttaaatat 43732230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 148 - 207
Target Start/End: Original strand, 25439253 - 25439317
Alignment:
Q  148 tgacggagaaatagaagcaaatgtaaatcatc-----caagctgaatggttgaaatggataagag 207  Q
    ||||||||||||||||||| ||||||||||||     ||||| | |||||||||||||| |||||    
T  25439253 tgacggagaaatagaagcatatgtaaatcatcgtatgcaagcaggatggttgaaatggagaagag 25439317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 322 - 455
Target Start/End: Complemental strand, 184141 - 184016
Alignment:
Q  322 atgatgttccaaacacatttgggtttgttgacattgctttgatcccttttcatagttggttttattactttatacttatgagaaattatgtaacttcaaa 421  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||        | |||||||||||||||||||| |||||||||    
T  184141 atgatgttccaaacaaatttgggtttgttgacattgctttgatcccttttcatagttggt--------tgtatacttatgagaaattatgcaacttcaaa 184050  T
Q  422 gtggaggaagagtgtgataagttgattgcttggg 455  Q
    || ||||||||||||||||||||||||| |||||    
T  184049 gtagaggaagagtgtgataagttgattgtttggg 184016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 322 - 455
Target Start/End: Original strand, 14633151 - 14633276
Alignment:
Q  322 atgatgttccaaacacatttgggtttgttgacattgctttgatcccttttcatagttggttttattactttatacttatgagaaattatgtaacttcaaa 421  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||        | |||||||||||||||||||| |||||||||    
T  14633151 atgatgttccaaacaaatttgggtttgttgacattgctttgatcccttttcatagttggt--------tgtatacttatgagaaattatgcaacttcaaa 14633242  T
Q  422 gtggaggaagagtgtgataagttgattgcttggg 455  Q
    || ||||||||||||||||||||||||| |||||    
T  14633243 gtagaggaagagtgtgataagttgattgtttggg 14633276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 92 - 211
Target Start/End: Original strand, 435883 - 436014
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatct-------tcagtataaagtgacggagaaatagaagcaaatgtaaatcatc----- 179  Q
    |||||||||||||||||||||||||||||||||||||||||||||       |  ||||||| ||||||||||||||||||| |||||| |||||         
T  435883 agttggagatcatatcataccccaagttacacggtttaaatatcttgggtccttcgtataaaatgacggagaaatagaagcagatgtaagtcatcgtatt 435982  T
Q  180 caagctgaatggttgaaatggataagagcctc 211  Q
    |||||||| ||||||||||||| |||||||||    
T  435983 caagctgagtggttgaaatggagaagagcctc 436014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 92 - 173
Target Start/End: Complemental strand, 48174721 - 48174633
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatct-------tcagtataaagtgacggagaaatagaagcaaatgtaa 173  Q
    |||||||||||||||||||||||||||||||||||||||||||||       |  ||| ||||||||||||||||||||||| ||||||    
T  48174721 agttggagatcatatcataccccaagttacacggtttaaatatcttgggtccttcgtacaaagtgacggagaaatagaagcagatgtaa 48174633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 23906929 - 23906884
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  23906929 agttggagatcatatcataccccaagttacacggtttaaatatctt 23906884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 33226863 - 33226908
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  33226863 agttggagatcatatcataccccaagttacacggtttaaatatctt 33226908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 92 - 173
Target Start/End: Complemental strand, 47265832 - 47265744
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt-------cagtataaagtgacggagaaatagaagcaaatgtaa 173  Q
    |||||||| ||||||||||||||||||||||  |||||||||||||        |||||||| ||||||||||||||||||||||||||    
T  47265832 agttggaggtcatatcataccccaagttacatagtttaaatatcttggatccatagtataaaatgacggagaaatagaagcaaatgtaa 47265744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 92 - 134
Target Start/End: Original strand, 50286625 - 50286667
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatat 134  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  50286625 agttggagatcatatcataccccaagttacacggtttaaatat 50286667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 92 - 211
Target Start/End: Complemental strand, 1777643 - 1777512
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatct-------tcagtataaagtgacggagaaatagaagcaaatgtaaatcatc----- 179  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||       |  ||| ||| |||| ||||||||||||||||||||| |||||         
T  1777643 agttggaaatcatatcataccccaagttacacgttttaaatatcttgggtccttcgtacaaaatgacagagaaatagaagcaaatgtaagtcatcgtatt 1777544  T
Q  180 caagctgaatggttgaaatggataagagcctc 211  Q
    |||||||  ||||||||||||| |||||||||    
T  1777543 caagctgggtggttgaaatggagaagagcctc 1777512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 92 - 211
Target Start/End: Complemental strand, 27450801 - 27450670
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt-------cagtataaagtgacggagaaatagaagcaaatgtaaatcatc----- 179  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||        |||  ||| ||| ||||||||||||||| ||||||||||||         
T  27450801 agttggagatcatatcataccccaagttacacagtttacatatcttgggtccatagtgcaaaatgatggagaaatagaagcagatgtaaatcatcgtatt 27450702  T
Q  180 caagctgaatggttgaaatggataagagcctc 211  Q
    |||||||  ||||||||||||| |||||||||    
T  27450701 caagctgggtggttgaaatggagaagagcctc 27450670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 31960442 - 31960397
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt 137  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||    
T  31960442 agttggagatcatatcataccccaatttacacggtttaaatatctt 31960397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 56374944 - 56374989
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt 137  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||    
T  56374944 agttggagagcatatcataccccaagttacacggtttaaatatctt 56374989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 10776047 - 10776002
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt 137  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||    
T  10776047 agttggagatcatatcataccacaagttacatggtttaaatatctt 10776002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 53707448 - 53707493
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt 137  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||    
T  53707448 agttgaagatcatatcataccccaagttacacggtctaaatatctt 53707493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 92 - 132
Target Start/End: Original strand, 30807252 - 30807292
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaat 132  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  30807252 agttggagatcatatcataccacaagttacacggtttaaat 30807292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 92 - 211
Target Start/End: Original strand, 16002583 - 16002713
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt-------cagtataaagtgacggagaaatagaagcaaatgtaaatcatc----- 179  Q
    ||||||| ||||||||||||||||| |||||||||||||| |||||        |||| ||| ||||||||| ||||||||| ||||||||||||         
T  16002583 agttggaaatcatatcataccccaaattacacggtttaaa-atcttggttccatagtacaaaatgacggagacatagaagcagatgtaaatcatcgtatt 16002681  T
Q  180 caagctgaatggttgaaatggataagagcctc 211  Q
     ||||||| |||||||||| || |||||||||    
T  16002682 taagctgagtggttgaaattgagaagagcctc 16002713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 48623155 - 48623110
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt 137  Q
    ||||||||| ||||||||||||||| ||||||| ||||||||||||    
T  48623155 agttggagagcatatcataccccaaattacacgatttaaatatctt 48623110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 137
Target Start/End: Original strand, 41427499 - 41427538
Alignment:
Q  98 agatcatatcataccccaagttacacggtttaaatatctt 137  Q
    |||||||||||||||||||||||||||  |||||||||||    
T  41427499 agatcatatcataccccaagttacacgacttaaatatctt 41427538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 137
Target Start/End: Original strand, 42037521 - 42037560
Alignment:
Q  98 agatcatatcataccccaagttacacggtttaaatatctt 137  Q
    |||||||||||| || ||||||||||||||||||||||||    
T  42037521 agatcatatcatcccacaagttacacggtttaaatatctt 42037560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 176
Target Start/End: Complemental strand, 41009924 - 41009890
Alignment:
Q  142 ataaagtgacggagaaatagaagcaaatgtaaatc 176  Q
    ||||| |||||||||||||||||||||||||||||    
T  41009924 ataaaatgacggagaaatagaagcaaatgtaaatc 41009890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 334 - 455
Target Start/End: Complemental strand, 8137 - 8024
Alignment:
Q  334 acacatttgggtttgttgacattgctttgatcccttttcatagttggttttattactttatacttatgagaaattatgtaacttcaaagtggaggaagag 433  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||        ||||||||||||||||| ||||||||||| |||||||||    
T  8137 acacatttgggtttgttgacattgctttgatccctttctatagttggttttat--------acttatgagaaattatgcaacttcaaagttgaggaagag 8046  T
Q  434 tgtgataagttgattgcttggg 455  Q
    ||||| ||| |||||| |||||    
T  8045 tgtgaaaagctgattgtttggg 8024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 8e-22; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 92 - 211
Target Start/End: Original strand, 3394364 - 3394495
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt-------cagtataaagtgacggagaaatagaagcaaatgtaaatcatc----- 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||        |||| ||| ||||||||||||||||||| ||||||||||||         
T  3394364 agttggagatcatatcataccccaagttacacggtttaaatatcttgggtccatagtacaaaatgacggagaaatagaagcagatgtaaatcatcgtatt 3394463  T
Q  180 caagctgaatggttgaaatggataagagcctc 211  Q
    |||||||  ||||||||||||| | |||||||    
T  3394464 caagctgggtggttgaaatggagatgagcctc 3394495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 92 - 211
Target Start/End: Complemental strand, 1288217 - 1288086
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatcttca-------gtataaagtgacggagaaatagaagcaaatgtaaatcatc----- 179  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |       ||| ||| ||||||||||||||||||| ||||||  ||||         
T  1288217 agttggagatcatatcataccccaagttacacggtttaaatatcttgagtccttcgtacaaaatgacggagaaatagaagcagatgtaagccatcgtatt 1288118  T
Q  180 caagctgaatggttgaaatggataagagcctc 211  Q
    |||| || |||||||||||||| |||||||||    
T  1288117 caagttggatggttgaaatggagaagagcctc 1288086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 1274919 - 1274964
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  1274919 agttggagatcatatcataccccaagttacacggtttaaatatctt 1274964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 2076102 - 2076057
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  2076102 agttggagatcatatcataccccaagttacacggtttaaatatctt 2076057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 3301503 - 3301548
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  3301503 agttggagatcatatcataccccaagttacacggtttaaatatctt 3301548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 12493015 - 12492970
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  12493015 agttggagatcatatcataccccaagttacacggtttaaatatctt 12492970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 16348030 - 16347985
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  16348030 agttggagatcatatcataccccaagttacacggtttaaatatctt 16347985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 20318645 - 20318690
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  20318645 agttggagatcatatcataccccaagttacacggtttaaatatctt 20318690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 10638951 - 10638996
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt 137  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||    
T  10638951 agttggaaatcatatcataccccaagttacacggtttaaatatctt 10638996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 28977485 - 28977440
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt 137  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  28977485 agttggagatcatatcataccccaagtcacacggtttaaatatctt 28977440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 24178178 - 24178223
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt 137  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||    
T  24178178 agttggagatcatatcataccctaagttacacggtttaaagatctt 24178223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 43558442 - 43558397
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt 137  Q
    |||||||||||||| |||||| ||||||||||| ||||||||||||    
T  43558442 agttggagatcatagcataccacaagttacacgatttaaatatctt 43558397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 93 - 137
Target Start/End: Complemental strand, 27302574 - 27302530
Alignment:
Q  93 gttggagatcatatcataccccaagttacacggtttaaatatctt 137  Q
    |||||||||||||||||||| |||  |||||||||||||||||||    
T  27302574 gttggagatcatatcatacctcaaactacacggtttaaatatctt 27302530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 38579129 - 38579084
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt 137  Q
    ||||||||||||||| ||| | |||||||||| |||||||||||||    
T  38579129 agttggagatcatattatagcacaagttacacagtttaaatatctt 38579084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 8e-22; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 92 - 211
Target Start/End: Complemental strand, 11992734 - 11992603
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt-------cagtataaagtgacggagaaatagaagcaaatgtaaatcatc----- 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||        |||| ||| ||| ||||||||||||||| ||||||||||||         
T  11992734 agttggagatcatatcataccccaagttacacggtttaaatatcttgggtctatagtacaaaatgatggagaaatagaagcagatgtaaatcatcgtatt 11992635  T
Q  180 caagctgaatggttgaaatggataagagcctc 211  Q
    |||||||  ||||||||||||| |||||||||    
T  11992634 caagctgggtggttgaaatggagaagagcctc 11992603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 2610182 - 2610227
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  2610182 agttggagatcatatcataccccaagttacacggtttaaatatctt 2610227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 93 - 137
Target Start/End: Complemental strand, 452249 - 452205
Alignment:
Q  93 gttggagatcatatcataccccaagttacacggtttaaatatctt 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  452249 gttggagatcatatcataccccaagttacacggtttaaatatctt 452205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 92 - 136
Target Start/End: Original strand, 13148967 - 13149011
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatct 136  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  13148967 agttggagatcatatcataccccaagttacacggtttaaatatct 13149011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 4807246 - 4807291
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt 137  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  4807246 agttggagatcatatcataccccaagttacacagtttaaatatctt 4807291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 92 - 211
Target Start/End: Original strand, 8180434 - 8180565
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatcttcag-------tataaagtgacggagaaatagaagcaaatgtaaatcatc----- 179  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||  |       |||||| ||||||||||||||||||| ||||||  ||||         
T  8180434 agttggagatcatatcatactccaagttacacggtttaaatattttgggtccttcttataaaatgacggagaaatagaagcagatgtaagccatcgtatt 8180533  T
Q  180 caagctgaatggttgaaatggataagagcctc 211  Q
    |||||||  ||||||||||||| |||||||||    
T  8180534 caagctgggtggttgaaatggagaagagcctc 8180565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 38453248 - 38453203
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt 137  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||    
T  38453248 agttggagatcatatcataccccaagttacacgatttaaatatctt 38453203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 24584234 - 24584189
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt 137  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||    
T  24584234 agttggagatcatatcagaccgcaagttacacggtttaaatatctt 24584189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 30743277 - 30743322
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt 137  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||    
T  30743277 agttggagatcataccatatcccaagttacacggtttaaatatctt 30743322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 92 - 179
Target Start/End: Complemental strand, 41763677 - 41763583
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt-------cagtataaagtgacggagaaatagaagcaaatgtaaatcatc 179  Q
    |||||||||| ||||||||||||||||| |||| ||||||||||||        |||| ||| || |||||||||||||||| ||||||||||||    
T  41763677 agttggagattatatcataccccaagttgcacgatttaaatatcttgggtccatagtacaaaatgtcggagaaatagaagcagatgtaaatcatc 41763583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 14769944 - 14769989
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt 137  Q
    ||||||||||||||||||| |  |||||||||||||||||||||||    
T  14769944 agttggagatcatatcatagcataagttacacggtttaaatatctt 14769989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 92 - 180
Target Start/End: Original strand, 37281763 - 37281858
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt-------cagtataaagtgacggagaaatagaagcaaatgtaaatcatcc 180  Q
    |||| |||||||| ||||||||||||||||||  ||||||||||||        |||||||| ||| ||||||||||||| | |||||||||||||    
T  37281763 agtttgagatcatgtcataccccaagttacacattttaaatatcttagctccatagtataaaatgaaggagaaatagaagtagatgtaaatcatcc 37281858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 45368251 - 45368207
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt 137  Q
    |||||||||||||||||||||| || ||||||||||||||||||||    
T  45368251 agttggagatcatatcatacccaaa-ttacacggtttaaatatctt 45368207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 12904624 - 12904664
Alignment:
Q  94 ttggagatcatatcataccccaagttacacggtttaaatat 134  Q
    ||||||||||||||||| | |||||||||||||||||||||    
T  12904624 ttggagatcatatcatatcacaagttacacggtttaaatat 12904664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 134
Target Start/End: Original strand, 876786 - 876828
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatat 134  Q
    |||||||||||||||| |||| |||||||||| ||||||||||    
T  876786 agttggagatcatatcctaccacaagttacacagtttaaatat 876828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 137
Target Start/End: Complemental strand, 3244266 - 3244234
Alignment:
Q  105 atcataccccaagttacacggtttaaatatctt 137  Q
    |||||| ||||||||||||||||||||||||||    
T  3244266 atcatatcccaagttacacggtttaaatatctt 3244234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 92 - 207
Target Start/End: Original strand, 25191033 - 25191160
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt-------cagtataaagtgacggagaaatagaagcaaatgtaaatcatc----- 179  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||        |||| ||| ||| ||||||||||||||||||||||||||||         
T  25191033 agttggagatcatatcatagcccaagttacacggtttaaatatcttgggtctatagtacaaaatgatggagaaatagaagcaaatgtaaatcatcgtatt 25191132  T
Q  180 caagctgaatggttgaaatggataagag 207  Q
    |||||||  ||||||||||||| |||||    
T  25191133 caagctgggtggttgaaatggagaagag 25191160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 51448337 - 51448292
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  51448337 agttggagatcatatcataccccaagttacacggtttaaatatctt 51448292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 52138482 - 52138527
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  52138482 agttggagatcatatcataccccaagttacacggtttaaatatctt 52138527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 92 - 179
Target Start/End: Original strand, 19736820 - 19736910
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatcttc---agtataaagtgacggagaaatagaagcaaatgtaaatcatc 179  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||   |||| ||| | || ||||||||  |||| ||||||||||||    
T  19736820 agttggagatcatatcataccccaagttacatggtttaaatatcttccatagtacaaaataacagagaaataagagcagatgtaaatcatc 19736910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 92 - 173
Target Start/End: Original strand, 38849748 - 38849836
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt-------cagtataaagtgacggagaaatagaagcaaatgtaa 173  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||||       ||||| ||| ||||||||||||||||||| ||||||    
T  38849748 agttggagatcatatcatacctcaatttacacggtttaaatatcttgggtccacagtacaaaatgacggagaaatagaagcagatgtaa 38849836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 19757722 - 19757767
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt 137  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||    
T  19757722 agttggagatcatatcataccccaagttacatggtttaaatatctt 19757767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 27917226 - 27917271
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt 137  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||    
T  27917226 agttggagatcatatcatatcccaagttacacggtttaaatatctt 27917271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 47542339 - 47542294
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt 137  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||    
T  47542339 agttggagatcatttcataccccaagttacacggtttaaatatctt 47542294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 96 - 179
Target Start/End: Original strand, 26489975 - 26490065
Alignment:
Q  96 ggagatcatatcataccccaagttacacggtttaaatatctt-----cag--tataaagtgacggagaaatagaagcaaatgtaaatcatc 179  Q
    |||||||||||||||| |||||||||| | ||||||||||||     ||   |||||| ||||||||||||||||||| ||||||||||||    
T  26489975 ggagatcatatcatactccaagttacatgatttaaatatcttggttccatgatataaaatgacggagaaatagaagcagatgtaaatcatc 26490065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 94 - 137
Target Start/End: Original strand, 28245093 - 28245136
Alignment:
Q  94 ttggagatcatatcataccccaagttacacggtttaaatatctt 137  Q
    ||||||||||||| |||||||||||||||||| |||||||||||    
T  28245093 ttggagatcatataataccccaagttacacggcttaaatatctt 28245136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 100 - 137
Target Start/End: Original strand, 9258541 - 9258578
Alignment:
Q  100 atcatatcataccccaagttacacggtttaaatatctt 137  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  9258541 atcatatcatatcccaagttacacggtttaaatatctt 9258578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 29817159 - 29817204
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt 137  Q
    |||||||||||||||||||||  ||||||||||||| |||||||||    
T  29817159 agttggagatcatatcataccataagttacacggttcaaatatctt 29817204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 48221438 - 48221483
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt 137  Q
    ||||| ||||||||||||||| ||||||||||  ||||||||||||    
T  48221438 agttgaagatcatatcataccacaagttacacattttaaatatctt 48221483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 179
Target Start/End: Complemental strand, 54425511 - 54425440
Alignment:
Q  115 aagttacacggtttaaatatcttc-------agtataaagtgacggagaaatagaagcaaatgtaaatcatc 179  Q
    |||||||||||||||||||||||        |||| ||| ||||||||||||||||||| ||||||||||||    
T  54425511 aagttacacggtttaaatatcttggatccatagtaaaaaatgacggagaaatagaagcatatgtaaatcatc 54425440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 2898 - 2853
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  2898 agttggagatcatatcataccccaagttacacggtttaaatatctt 2853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 5846 - 5891
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  5846 agttggagatcatatcataccccaagttacacggtttaaatatctt 5891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 32630261 - 32630306
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  32630261 agttggagatcatatcataccccaagttacacggtttaaatatctt 32630306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 92 - 211
Target Start/End: Complemental strand, 33350434 - 33350303
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaata-------tcttcagtataaagtgacggagaaatagaagcaaatgtaaatcatc----- 179  Q
    ||||||||||||||||||||||||||||||||||||||||||       ||||  ||| ||| ||||||||||||||||||| ||||||  ||||         
T  33350434 agttggagatcatatcataccccaagttacacggtttaaatatctagggtctttcgtacaaaatgacggagaaatagaagcagatgtaagccatcgtatt 33350335  T
Q  180 caagctgaatggttgaaatggataagagcctc 211  Q
    |||||||  ||||||||||||| |||||||||    
T  33350334 caagctgggtggttgaaatggagaagagcctc 33350303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 46356479 - 46356434
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  46356479 agttggagatcatatcataccccaagttacacggtttaaatatctt 46356434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 92 - 210
Target Start/End: Original strand, 38606659 - 38606789
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt-------cagtataaagtgacggagaaatagaagcaaatgtaaatcatc----- 179  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||        |||| ||| ||||| ||||||||||||| ||||||| ||||         
T  38606659 agttggagatcatatcatatcccaagttacacggtttaaatatcttgggtccatagtacaaaatgacgaagaaatagaagcagatgtaaaccatcgtatt 38606758  T
Q  180 caagctgaatggttgaaatggataagagcct 210  Q
    |||||||  ||||||||||||| ||||||||    
T  38606759 caagctgggtggttgaaatggagaagagcct 38606789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 93 - 179
Target Start/End: Complemental strand, 24177822 - 24177729
Alignment:
Q  93 gttggagatcatatcataccccaagttacacggtttaaatatc----ttc---agtataaagtgacggagaaatagaagcaaatgtaaatcatc 179  Q
    |||||||||||||||||||||||| ||||||||||||||||||     ||   |||| ||| ||||||||||||||||||| ||||||||||||    
T  24177822 gttggagatcatatcataccccaatttacacggtttaaatatcacgggtcaatagtacaaaatgacggagaaatagaagcagatgtaaatcatc 24177729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 36651648 - 36651693
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt 137  Q
    |||||||||||||||||||||||||||||| |||||||||||||||    
T  36651648 agttggagatcatatcataccccaagttacgcggtttaaatatctt 36651693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 49028921 - 49028966
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt 137  Q
    |||||||||||| |||||||||||||||||||||||||||||||||    
T  49028921 agttggagatcagatcataccccaagttacacggtttaaatatctt 49028966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 95 - 137
Target Start/End: Original strand, 37616573 - 37616615
Alignment:
Q  95 tggagatcatatcataccccaagttacacggtttaaatatctt 137  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
T  37616573 tggagatcatatcataccccaagttacacgatttaaatatctt 37616615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 11593614 - 11593659
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt 137  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||    
T  11593614 agttgaagatcatatcataccccaagttagacggtttaaatatctt 11593659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 31004878 - 31004922
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt 137  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  31004878 agttggagatcatatcataccccaagttacac-gtttaaatatctt 31004922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 39907007 - 39906962
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt 137  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||    
T  39907007 agttggagatcatatcatatcccatgttacacggtttaaatatctt 39906962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 36869917 - 36869872
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt 137  Q
    ||||||||| ||||||||||||||| |||| |||||||||||||||    
T  36869917 agttggagagcatatcataccccaaattacgcggtttaaatatctt 36869872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 96 - 211
Target Start/End: Original strand, 48919046 - 48919173
Alignment:
Q  96 ggagatcatatcataccccaagttacacggtttaaatatctt-------cagtataaagtgacggagaaatagaagcaaatgtaaatcatc-----caag 183  Q
    ||||||||||| | ||||||||||||||||||||||||| ||        |||| ||| ||||||||||||||||||| |||| |||||||     ||||    
T  48919046 ggagatcatattacaccccaagttacacggtttaaatattttggatccatagtacaaaatgacggagaaatagaagcatatgtgaatcatcgtattcaag 48919145  T
Q  184 ctgaatggttgaaatggataagagcctc 211  Q
    |||  | ||||||||||| |||||||||    
T  48919146 ctgggtagttgaaatggagaagagcctc 48919173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 148 - 211
Target Start/End: Original strand, 43281393 - 43281461
Alignment:
Q  148 tgacggagaaatagaagcaaatgtaaatcatc-----caagctgaatggttgaaatggataagagcctc 211  Q
    ||||||||||||||||||| ||||||||||||     |||||||  ||||||||||||| |||||||||    
T  43281393 tgacggagaaatagaagcagatgtaaatcatcgtattcaagctgggtggttgaaatggagaagagcctc 43281461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 18608318 - 18608273
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt 137  Q
    ||||||||||||||||||| | ||||||||||  ||||||||||||    
T  18608318 agttggagatcatatcatatcacaagttacacattttaaatatctt 18608273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 18626560 - 18626605
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt 137  Q
    ||||||||||||||||||| | ||||||||||  ||||||||||||    
T  18626560 agttggagatcatatcatatcacaagttacacattttaaatatctt 18626605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 18637234 - 18637279
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt 137  Q
    ||||||||||||||||||| | ||||||||||  ||||||||||||    
T  18637234 agttggagatcatatcatatcacaagttacacattttaaatatctt 18637279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 18650669 - 18650714
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt 137  Q
    ||||||||||||||||||| | ||||||||||  ||||||||||||    
T  18650669 agttggagatcatatcatatcacaagttacacattttaaatatctt 18650714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 92 - 211
Target Start/End: Complemental strand, 5258778 - 5258647
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt-------cagtataaagtgacggagaaatagaagcaaatgtaaatcatc----- 179  Q
    |||||||||||||||||||||||||||||||| |||||||||||||        |||| ||| ||||||||||||||||||  ||||| ||||||         
T  5258778 agttggagatcatatcataccccaagttacacagtttaaatatcttgggtccatagtacaaaatgacggagaaatagaagctgatgtacatcatcgtatt 5258679  T
Q  180 caagctgaatggttgaaatggataagagcctc 211  Q
    |||||||  ||||||||||||| |||||||||    
T  5258678 caagctgggtggttgaaatggagaagagcctc 5258647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 9706430 - 9706475
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  9706430 agttggagatcatatcataccccaagttacacggtttaaatatctt 9706475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 10100485 - 10100440
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  10100485 agttggagatcatatcataccccaagttacacggtttaaatatctt 10100440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 92 - 207
Target Start/End: Original strand, 5631471 - 5631599
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt--------cagtataaagtgacggagaaatagaagcaaatgtaaatcatc---- 179  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||         |||| ||| ||||||||||||||||||| ||||||||||||        
T  5631471 agttagagatcatatcataccccaagttacacggtttaaatatttttgggtccatagtacaaaatgacggagaaatagaagcagatgtaaatcatcgtat 5631570  T
Q  180 -caagctgaatggttgaaatggataagag 207  Q
     |||||||  ||||||||||||| |||||    
T  5631571 tcaagctgggtggttgaaatggagaagag 5631599  T

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Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 92 - 211
Target Start/End: Complemental strand, 20428264 - 20428133
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt-------cagtataaagtgacggagaaatagaagcaaatgtaaatc-----atc 179  Q
    ||||||||||||||||||||| |||||||| |||||||||||| ||       ||||| |||  |||||| ||||||||||| |||||||||     |||    
T  20428264 agttggagatcatatcataccacaagttacgcggtttaaatatattgggtccacagtacaaaacgacggaaaaatagaagcagatgtaaatcatcgtatc 20428165  T
Q  180 caagctgaatggttgaaatggataagagcctc 211  Q
    |||||||  ||||||||||||| |||||||||    
T  20428164 caagctgggtggttgaaatggagaagagcctc 20428133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 95 - 134
Target Start/End: Original strand, 2689313 - 2689352
Alignment:
Q  95 tggagatcatatcataccccaagttacacggtttaaatat 134  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  2689313 tggagatcatatcataccctaagttacacggtttaaatat 2689352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 28732452 - 28732490
Alignment:
Q  25 agttgtaaagaaagcgtttaattagaaagaaatttataa 63  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  28732452 agttgtaaagaaagcgtttaattagaaacaaatttataa 28732490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 3632670 - 3632715
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt 137  Q
    |||||||||||||||||||||| || ||||||| ||||||||||||    
T  3632670 agttggagatcatatcataccctaaattacacgatttaaatatctt 3632715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 92 - 211
Target Start/End: Complemental strand, 32083373 - 32083242
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatcttc-------agtataaagtgacggagaaatagaagcaaatgtaaatcatc----- 179  Q
    |||||||||||||||||||||||||||| |||  ||||||||||||        |||| ||| ||||||||||||||| ||||||||||||||||         
T  32083373 agttggagatcatatcataccccaagttgcacaatttaaatatcttgggtccatagtacaaaatgacggagaaatagaggcaaatgtaaatcatcgtatt 32083274  T
Q  180 caagctgaatggttgaaatggataagagcctc 211  Q
    |||||||  ||||||||||||| |||||||||    
T  32083273 caagctgggtggttgaaatggagaagagcctc 32083242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 96 - 211
Target Start/End: Complemental strand, 34827726 - 34827599
Alignment:
Q  96 ggagatcatatcataccccaagttacacggtttaaatatctt-------cagtataaagtgacggagaaatagaagcaaatgtaaatc-----atccaag 183  Q
    |||||||||||||||||| |||||||| ||||||||||||||        |||| ||| ||||||||||||||||||| |||||||||     || ||||    
T  34827726 ggagatcatatcataccctaagttacaaggtttaaatatcttgggtccatagtacaaaatgacggagaaatagaagcatatgtaaatcattgtattcaag 34827627  T
Q  184 ctgaatggttgaaatggataagagcctc 211  Q
     ||||||||||||||||| |||||||||    
T  34827626 ttgaatggttgaaatggagaagagcctc 34827599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 43241009 - 43240964
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  43241009 agttggagatcatatcataccccaagttacacggtttaaatatctt 43240964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 51601712 - 51601757
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  51601712 agttggagatcatatcataccccaagttacacggtttaaatatctt 51601757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 91 - 211
Target Start/End: Original strand, 19936174 - 19936307
Alignment:
Q  91 cagttggagatcatatcataccccaagttacacggtttaaatatcttcagt--at------aaagtgacggagaaatagaagcaaatgtaaatcatc--- 179  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||  ||  ||      ||| ||| ||||||||||||||| ||||||||||||       
T  19936174 cagttggagatcatatcataccccaagttacatggtttaaatatcttgggtccataatacaaaaatgaaggagaaatagaagcatatgtaaatcatcgta 19936273  T
Q  180 --caagctgaatggttgaaatggataagagcctc 211  Q
      |||||||  |||||||||||||||||| ||||    
T  19936274 ttcaagctgggtggttgaaatggataagaacctc 19936307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 1210399 - 1210444
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt 137  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  1210399 agttggagatcatatcataccccaagttacacagtttaaatatctt 1210444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 8671574 - 8671619
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt 137  Q
    |||||||||||||||||||||| |||||||||||||||||||||||    
T  8671574 agttggagatcatatcataccctaagttacacggtttaaatatctt 8671619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 51441392 - 51441347
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt 137  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  51441392 agttggagatcatatcataccccaagttacacagtttaaatatctt 51441347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 49348022 - 49347976
Alignment:
Q  92 agttggagatcatatcataccccaagttacac-ggtttaaatatctt 137  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||    
T  49348022 agttggagatcatatcataccccaagttacactggtttaaatatctt 49347976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 40419335 - 40419380
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt 137  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||    
T  40419335 agttggagatcatatcataccacaagttacacagtttaaatatctt 40419380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 92 - 179
Target Start/End: Original strand, 27445552 - 27445646
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt-------cagtataaagtgacggagaaatagaagcaaatgtaaatcatc 179  Q
    ||||||||||| ||||||||||||||||||||||||||| ||| ||        |||| ||| ||| ||||||||||||||| ||||||||||||    
T  27445552 agttggagatcttatcataccccaagttacacggtttaattatgttgggtccatagtacaaaatgatggagaaatagaagcagatgtaaatcatc 27445646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 92 - 178
Target Start/End: Complemental strand, 37463493 - 37463400
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt-------cagtataaagtgacggagaaatagaagcaaatgtaaatcat 178  Q
    |||||||||||||||||||| || |||||||| |||||||||||||        |||| ||| ||||||||||||||||||| ||||| |||||    
T  37463493 agttggagatcatatcatactccgagttacacagtttaaatatcttgagtccatagtacaaaatgacggagaaatagaagcagatgtatatcat 37463400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 28528235 - 28528280
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt 137  Q
    |||||||||||||| |||||| |||||||||| |||||||||||||    
T  28528235 agttggagatcatagcataccacaagttacacagtttaaatatctt 28528280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 6640780 - 6640825
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt 137  Q
    |||| |||||||||| | ||| ||||||||||||||||||||||||    
T  6640780 agttagagatcatattacaccacaagttacacggtttaaatatctt 6640825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 7921581 - 7921626
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt 137  Q
    |||||||||||||||| |||| ||||||||||| |||| |||||||    
T  7921581 agttggagatcatatcttaccacaagttacacgatttatatatctt 7921626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 121
Target Start/End: Complemental strand, 32405112 - 32405083
Alignment:
Q  92 agttggagatcatatcataccccaagttac 121  Q
    ||||||||||||||||||||||||||||||    
T  32405112 agttggagatcatatcataccccaagttac 32405083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 46226940 - 46226895
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt 137  Q
    |||||||||||||| ||||||   ||||||||||||||||||||||    
T  46226940 agttggagatcataccataccttgagttacacggtttaaatatctt 46226895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 179
Target Start/End: Complemental strand, 35828967 - 35828927
Alignment:
Q  139 agtataaagtgacggagaaatagaagcaaatgtaaatcatc 179  Q
    |||| |||| |||||||||||||||||| ||||||||||||    
T  35828967 agtacaaagcgacggagaaatagaagcatatgtaaatcatc 35828927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 92 - 179
Target Start/End: Original strand, 82375 - 82469
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt-------cagtataaagtgacggagaaatagaagcaaatgtaaatcatc 179  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||        |||| ||| ||||||||||||||||||| ||||||||||||    
T  82375 agttggagattatatcataccacaagttacacggtttaaatatcttgggtccatagtaaaaaatgacggagaaatagaagcagatgtaaatcatc 82469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 92 - 173
Target Start/End: Complemental strand, 12226 - 12138
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt-------cagtataaagtgacggagaaatagaagcaaatgtaa 173  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||        |||| ||| ||||||||||||||||||| ||||||    
T  12226 agttggagatcatatcataccccaagttacatggtttaaatatcttgggtccatagtacaaaatgacggagaaatagaagcatatgtaa 12138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 31122 - 31167
Alignment:
Q  92 agttggagatcatatcataccccaagttacacggtttaaatatctt 137  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  31122 agttggagatcatatcataccccaagttacacggtttaaacatctt 31167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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