View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14994_low_7 (Length: 440)
Name: NF14994_low_7
Description: NF14994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14994_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 11 - 422
Target Start/End: Original strand, 55634374 - 55634789
Alignment:
| Q |
11 |
cacagacttcacacgcaacagccccacacccaaacctatttaatctcagcttcactctcaaagtcccttccttagttcatttctaattcgtagagtaggg |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
55634374 |
cacagacttcacacgcaacagccccacacccaaacctatttaatctcagcttcactctcagagtcccttccttagttcatttctaattcgtagagtaggg |
55634473 |
T |
|
| Q |
111 |
ttttgtattttcaattccgaaataatcatcgttttcaacctcaatcgtagttctctactcctcttcactcttcctccattgtcgagnnnnnnnngtaacc |
210 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||| |
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| T |
55634474 |
ttttgtattttcaattccgaaataatcatcgttttcaacctcaacggtagttctctactcctcttcactattcctccattgtcgagaaaaaaaagtaacc |
55634573 |
T |
|
| Q |
211 |
atcgaacaccgttactctgtggt----tccatcgtgtttccgcgataacgtgtctgatttgagttttgttttgtgatgttaggtttagagaatcttcaat |
306 |
Q |
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||| | ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55634574 |
atcaatcaccgttactctgtggttggttccatcgtgtttccgcgatcacgtgtctgatttgagttttgttttgtgatgttaggtttagagaatcttcaat |
55634673 |
T |
|
| Q |
307 |
ggttgctactgtctggtccgatgataacaaccaacaactggaagcaactactcaatttcggatgcttctttgcaattgtaactattgattttctttcatg |
406 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55634674 |
ggttgctacggtctggtccgatgataacaaccaacaactggaagcaactactcaatttcggatgcttctttgcaattgtaactattgattttctttcatg |
55634773 |
T |
|
| Q |
407 |
tttttaatgcgttgct |
422 |
Q |
| |
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|||||||||||||||| |
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| T |
55634774 |
tttttaatgcgttgct |
55634789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 304 - 416
Target Start/End: Complemental strand, 54862892 - 54862780
Alignment:
| Q |
304 |
aatggttgctactgtctggtccgatgataacaaccaacaactggaagcaactactcaatttcggatgcttctttgcaattgtaactattgattttctttc |
403 |
Q |
| |
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||||||||||| | |||||||||||||||||| |||||||| ||||||||||| ||||||||| || ||||| || |||||| |||||||| ||| |
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| T |
54862892 |
aatggttgctaatatctggtccgatgataacagtcaacaactcgaagcaactacggaatttcggaagcgtctttccatcggtaactgttgattttatttg |
54862793 |
T |
|
| Q |
404 |
atgtttttaatgc |
416 |
Q |
| |
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||||||||||||| |
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| T |
54862792 |
atgtttttaatgc |
54862780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 303 - 416
Target Start/End: Original strand, 54626474 - 54626587
Alignment:
| Q |
303 |
caatggttgctactgtctggtccgatgataacaaccaacaactggaagcaactactcaatttcggatgcttctttgcaattgtaactattgattttcttt |
402 |
Q |
| |
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||||||||||| | |||||||||||||||||| ||||||||| ||||||||||| ||||||||| || ||||| | | ||||| |||||||| ||| |
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| T |
54626474 |
caatggttgctgatatctggtccgatgataacagccaacaactcgaagcaactacggaatttcggaagcgtctttccgttggtaaccgttgattttattt |
54626573 |
T |
|
| Q |
403 |
catgtttttaatgc |
416 |
Q |
| |
|
||||||||||||| |
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|
| T |
54626574 |
gatgtttttaatgc |
54626587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 317 - 416
Target Start/End: Complemental strand, 52987089 - 52986993
Alignment:
| Q |
317 |
gtctggtccgatgataacaaccaacaactggaagcaactactcaatttcggatgcttctttgcaattgtaactattgattttctttcatgtttttaatgc |
416 |
Q |
| |
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|||||||| |||||||||| |||||||||||||||||||| ||| |||||| |||||||| ||| |||||| ||||||||| ||||||||||||||| |
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| T |
52987089 |
gtctggtcggatgataacatccaacaactggaagcaactaagcaaattcggaggcttcttt-caacagtaactgttgattttc--tcatgtttttaatgc |
52986993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 303 - 416
Target Start/End: Complemental strand, 55660062 - 55659949
Alignment:
| Q |
303 |
caatggttgctactgtctggtccgatgataacaaccaacaactggaagcaactactcaatttcggatgcttctttgcaattgtaactattgattttcttt |
402 |
Q |
| |
|
|||| ||||||| |||||||| |||||||||| |||||| ||||||||||||| || ||||| | |||| | | || |||| |||||||||||||| |
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| T |
55660062 |
caatagttgctatggtctggtcggatgataacagccaacagttggaagcaactacccactttcgaaagcttatctccacaagtaattattgattttcttt |
55659963 |
T |
|
| Q |
403 |
catgtttttaatgc |
416 |
Q |
| |
|
|||||||||||||| |
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|
| T |
55659962 |
catgtttttaatgc |
55659949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 11 - 422
Target Start/End: Original strand, 16437344 - 16437759
Alignment:
| Q |
11 |
cacagacttcacacgcaacagccccacacccaaacctatttaatctcagcttcactctcaaagtcccttccttagttcatttctaattcgtagagtaggg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
16437344 |
cacagacttcacacgcaacagccccacacccaaacctatttaatctcagcttcactctcagagtcccttccttagttcatttctaattcgtagagtaggg |
16437443 |
T |
|
| Q |
111 |
ttttgtattttcaattccgaaataatcatcgttttcaacctcaatcgtagttctctactcctcttcactcttcctccattgtcgagnnnnnnnngtaacc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||| |
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|
| T |
16437444 |
ttttgtattttcaattccgaaataatcatcgttttcaacctcaacggtagttctctactcctcttcactattcctccattgtcgagaaaaaaaagtaacc |
16437543 |
T |
|
| Q |
211 |
atcgaacaccgttactctgtggt----tccatcgtgtttccgcgataacgtgtctgatttgagttttgttttgtgatgttaggtttagagaatcttcaat |
306 |
Q |
| |
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||| | ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16437544 |
atcaatcaccgttactctgtggttggttccatcgtgtttccgcgatcacgtgtctgatttgagttttgttttgtgatgttaggtttagagaatcttcaat |
16437643 |
T |
|
| Q |
307 |
ggttgctactgtctggtccgatgataacaaccaacaactggaagcaactactcaatttcggatgcttctttgcaattgtaactattgattttctttcatg |
406 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16437644 |
ggttgctacggtctggtccgatgataacaaccaacaactggaagcaactactcaatttcggatgcttctttgcaattgtaactattgattttctttcatg |
16437743 |
T |
|
| Q |
407 |
tttttaatgcgttgct |
422 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
16437744 |
tttttaatgcgttgct |
16437759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 303 - 414
Target Start/End: Original strand, 13400818 - 13400929
Alignment:
| Q |
303 |
caatggttgctactgtctggtccgatgataacaaccaacaactggaagcaactactcaatttcggatgcttctttgcaattgtaactattgattttcttt |
402 |
Q |
| |
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||||||||||| ||| ||||| |||||||| || |||||||| ||||||||||| |||||||||| |||||||| || |||| | ||||||||| || |
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| T |
13400818 |
caatggttgctggtgtttggtcagatgataataatcaacaacttgaagcaactacgcaatttcggaagcttctttccataggtaattgttgattttcatt |
13400917 |
T |
|
| Q |
403 |
catgtttttaat |
414 |
Q |
| |
|
||||||||||| |
|
|
| T |
13400918 |
gatgtttttaat |
13400929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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