View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14994_low_8 (Length: 424)
Name: NF14994_low_8
Description: NF14994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14994_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 16 - 408
Target Start/End: Complemental strand, 6909948 - 6909557
Alignment:
| Q |
16 |
caaaggttattaaagacgtgtatattccctcttgaacttaccttgcaaaacaacaaatgcaaaaatgtgcaagtaaccatcaactttttcatcacactca |
115 |
Q |
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| T |
6909948 |
caaaggttattaaagacgtgtatattccctcttgaacttaccttgcaaaacaacaaatgcaaaaatgtgcaagtaaccatcaactttttcatcccactca |
6909849 |
T |
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| Q |
116 |
caattcaaacataacttatccctttcaatgcacttcctccatatgcaaagaataggatgttgaatttatccactcaaaattttaaagagttaaacatatt |
215 |
Q |
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| T |
6909848 |
caattcaaacataacttatccctttcaatgcacttcctccatatgcaaagaataggatgttgaatttatccactcaaaattttaaagagttaaacatatt |
6909749 |
T |
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| Q |
216 |
tttagttcgtataaaattataataagttgtttttagtatctgtacaaattttcttcaaattttagattttacaaaattatattgtaaatagtttaagtct |
315 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
6909748 |
tttagttcttataaaattataataagttgtttttagtatctgtacaaattttcttcaaattttaaattttacaaaattatattgtaaatagtttaagtct |
6909649 |
T |
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| Q |
316 |
ctcctgaaataagatgttcaattatcattcaacttttaaagttttgaatgannnnnnnnnngtcgtgtttaaaatatttcttcacataaaaat |
408 |
Q |
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| T |
6909648 |
ctcctgaaataagatgttcaattatcattcaacttttaaatttttgaatga-attttttttgtcgtgtttaaaatatttcttcacataaaaat |
6909557 |
T |
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