View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14994_low_9 (Length: 325)

Name: NF14994_low_9
Description: NF14994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14994_low_9
NF14994_low_9
[»] chr1 (3 HSPs)
chr1 (25-311)||(33406239-33406525)
chr1 (160-230)||(30956660-30956730)
chr1 (145-224)||(16708026-16708105)
[»] chr4 (1 HSPs)
chr4 (160-226)||(24223659-24223725)
[»] chr3 (1 HSPs)
chr3 (187-234)||(30726615-30726662)
[»] chr7 (1 HSPs)
chr7 (160-230)||(23010892-23010962)
[»] chr5 (1 HSPs)
chr5 (187-232)||(34522639-34522684)


Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 25 - 311
Target Start/End: Original strand, 33406239 - 33406525
Alignment:
Q  25 ttctcttccatatattacatattttcaaactcattaagttgtattctagtactttgttttagtaacatgtattattacagtgaagaaggtgatgatggat 124  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||    
T  33406239 ttctcttccatatattacatattttcaaactcataaagttgtattctagtactttgttttagtaacatgaattattcaagtgaagaaggtgatgatggat 33406338  T
Q  125 atgatcaaggaaaaagacgttcttatgaatgcacattttgcaaaagaggattcacaaatgcacaagctttaggtggtcacatgaatattcataggaaaga 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33406339 atgatcaaggaaaaagacgttcttatgaatgcacattttgcaaaagaggattcacaaatgcacaagctttaggtggtcacatgaatattcataggaaaga 33406438  T
Q  225 tagagctaaggctagtaagcaaccaaattcttcttcatcacaaattggaactaaattctacaccaatgatgaaactatggtctttcc 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33406439 tagagctaaggctagtaagcaaccaaattcttcttcatcacaaattggaactaaattctacaccaatgatgaaactatggtctttcc 33406525  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 30956730 - 30956660
Alignment:
Q  160 ttttgcaaaagaggattcacaaatgcacaagctttaggtggtcacatgaatattcataggaaagatagagc 230  Q
    |||||||||||||| ||||||| ||| |||||||||||||| |||||||| |||||||| |||||||||||    
T  30956730 ttttgcaaaagaggtttcacaactgctcaagctttaggtggacacatgaacattcatagaaaagatagagc 30956660  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 224
Target Start/End: Complemental strand, 16708105 - 16708026
Alignment:
Q  145 tcttatgaatgcacattttgcaaaagaggattcacaaatgcacaagctttaggtggtcacatgaatattcataggaaaga 224  Q
    |||||||| ||||||||||||||||| || ||||| |||||    || ||||| || |||||||||||||||||||||||    
T  16708105 tcttatgattgcacattttgcaaaaggggtttcactaatgctagggcattaggaggccacatgaatattcataggaaaga 16708026  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 160 - 226
Target Start/End: Complemental strand, 24223725 - 24223659
Alignment:
Q  160 ttttgcaaaagaggattcacaaatgcacaagctttaggtggtcacatgaatattcataggaaagata 226  Q
    |||||||| ||||||||| | |||||||||||| | ||||| |||||||||||||||||||||||||    
T  24223725 ttttgcaagagaggattctctaatgcacaagctcttggtggacacatgaatattcataggaaagata 24223659  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 234
Target Start/End: Complemental strand, 30726662 - 30726615
Alignment:
Q  187 caagctttaggtggtcacatgaatattcataggaaagatagagctaag 234  Q
    |||||||||||||||||||||||| ||||||| | |||||||||||||    
T  30726662 caagctttaggtggtcacatgaatgttcatagaagagatagagctaag 30726615  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 23010962 - 23010892
Alignment:
Q  160 ttttgcaaaagaggattcacaaatgcacaagctttaggtggtcacatgaatattcataggaaagatagagc 230  Q
    |||||||| ||||||||| | ||||||||||| ||||| || ||||||||||| ||||| | |||||||||    
T  23010962 ttttgcaagagaggattctctaatgcacaagcattaggaggccacatgaatatccatagaagagatagagc 23010892  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 34522639 - 34522684
Alignment:
Q  187 caagctttaggtggtcacatgaatattcataggaaagatagagcta 232  Q
    |||||| | ||||||||||||||||||||||||| |||||||||||    
T  34522639 caagctcttggtggtcacatgaatattcataggagagatagagcta 34522684  T

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