View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14995_high_4 (Length: 278)

Name: NF14995_high_4
Description: NF14995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14995_high_4
NF14995_high_4
[»] chr1 (2 HSPs)
chr1 (1-262)||(17583826-17584087)
chr1 (8-205)||(17592638-17592835)
[»] chr5 (13 HSPs)
chr5 (11-190)||(28475205-28475384)
chr5 (10-218)||(32763339-32763550)
chr5 (11-167)||(32768344-32768499)
chr5 (10-174)||(25477756-25477920)
chr5 (10-174)||(32557363-32557527)
chr5 (19-168)||(32655587-32655736)
chr5 (44-171)||(32651319-32651446)
chr5 (24-155)||(32752167-32752298)
chr5 (111-169)||(32660565-32660623)
chr5 (10-168)||(32748109-32748267)
chr5 (10-116)||(32755696-32755802)
chr5 (10-169)||(32710587-32710746)
chr5 (18-73)||(32858859-32858914)
[»] chr7 (3 HSPs)
chr7 (14-169)||(37577556-37577711)
chr7 (10-102)||(32895072-32895164)
chr7 (18-174)||(7969388-7969547)


Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 17583826 - 17584087
Alignment:
Q  1 aaagacataccccctgagggttgagagttcagacacaataatgaatgtgaagaagaagattcttgacaaggaagatatcgcagtgcaccagcaacgtctg 100  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  17583826 aaagacataccccctgagggtggagagttcagacacgataatgaatgtgaagaagaagattcttgacaaggaagatattgcagtgcaccagcaacgtctg 17583925  T
Q  101 atatttgacggtaagcaactagaggacaatcggacccttgccgattacaacatccaagagaagtcaaccatccatctttgcctccgcctcattgggaact 200  Q
    || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  17583926 atctttgacggtaagcaactagaggacaaccggacccttgccgattacaacatccaagagaagtcaaccattcatctctgcctccgcctcattgggaact 17584025  T
Q  201 agatcaccaccacaccatcgctaatactacttccatgcgcaagcatctgtccacctcattat 262  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  17584026 agatcaccacctcaccatcgctaatactacttccaagcgcaagcatctgtccgcctcattat 17584087  T

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Target: chr1; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 8 - 205
Target Start/End: Original strand, 17592638 - 17592835
Alignment:
Q  8 taccccctgagggttgagagttcagacacaataatgaatgtgaagaagaagattcttgacaaggaagatatcgcagtgcaccagcaacgtctgatatttg 107  Q
    ||||| || |||||||| |||||||||||||||||  ||||||||||||||||||||||||||||| ||||| | ||||||||||||||| |||| ||||    
T  17592638 taccctctaagggttgaaagttcagacacaataatcgatgtgaagaagaagattcttgacaaggaaaatatcccggtgcaccagcaacgtttgatctttg 17592737  T
Q  108 acggtaagcaactagaggacaatcggacccttgccgattacaacatccaagagaagtcaaccatccatctttgcctccgcctcattgggaactagatc 205  Q
     |||||||  |||||| ||  | |||||||||| ||||||||||||| |||||||||||||||||||  | |||||||||||| ||||||||||||||    
T  17592738 gcggtaaggtactagatgaggaccggacccttgtcgattacaacatcaaagagaagtcaaccatccacgtctgcctccgcctccttgggaactagatc 17592835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 6e-40; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 11 - 190
Target Start/End: Original strand, 28475205 - 28475384
Alignment:
Q  11 cccctgagggttgagagttcagacacaataatgaatgtgaagaagaagattcttgacaaggaagatatcgcagtgcaccagcaacgtctgatatttgacg 110  Q
    |||||||||||||||||||||||||| ||| |  ||||||||||||||||||||||||||||||  ||| || | ||| |||||||||| ||    ||||    
T  28475205 cccctgagggttgagagttcagacacgatagtcgatgtgaagaagaagattcttgacaaggaagggatcccaatacacgagcaacgtctaatcaacgacg 28475304  T
Q  111 gtaagcaactagaggacaatcggacccttgccgattacaacatccaagagaagtcaaccatccatctttgcctccgcctc 190  Q
    |||||||||||||||||||||  |||||||||  |||||||||||||||||| ||||||||||  |||  ||||||||||    
T  28475305 gtaagcaactagaggacaatcttacccttgccagttacaacatccaagagaactcaaccatcctccttgtcctccgcctc 28475384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 10 - 218
Target Start/End: Original strand, 32763339 - 32763550
Alignment:
Q  10 ccccctgagggttgagagttcagacacaataatgaatgtgaagaagaagattcttgacaaggaagatatcgcagtgcaccagcaacgtctgatatt---t 106  Q
    |||| ||||||||||||||||||||||||||   ||||||||||| |||||||||||||||||||  ||| || ||||| |||||||||||||  |        
T  32763339 ccccttgagggttgagagttcagacacaatagaaaatgtgaagaaaaagattcttgacaaggaagggatcccaatgcacgagcaacgtctgatcatcgac 32763438  T
Q  107 gacggtaagcaactagaggacaatcggacccttgccgattacaacatccaagagaagtcaaccatccatctttgcctccgcctcattgggaactagatca 206  Q
    |||||||||||  |||||||||| |  ||||||||| ||||||||||||||||||| ||||||||||| ||   | ||||||||  ||||| |||||| |    
T  32763439 gacggtaagcagttagaggacaaccttacccttgccaattacaacatccaagagaattcaaccatccacctcctcatccgcctccatgggagctagatga 32763538  T
Q  207 ccaccacaccat 218  Q
    ||| ||||||||    
T  32763539 ccagcacaccat 32763550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 11 - 167
Target Start/End: Original strand, 32768344 - 32768499
Alignment:
Q  11 cccctgagggttgagagttcagacacaataatgaatgtgaagaagaagattcttgacaaggaagatatcgcagtgcaccagcaacgtctgatatttgacg 110  Q
    |||||||||||| ||| ||||||||| ||| | ||||||||||||||| || || |||||||||  ||| |||| ||||| |||||| ||||||||| ||    
T  32768344 cccctgagggttaagatttcagacacgatagttaatgtgaagaagaagtttttt-acaaggaagggatcccagtacaccaacaacgtttgatatttgccg 32768442  T
Q  111 gtaagcaactagaggacaatcggacccttgccgattacaacatccaagagaagtcaa 167  Q
    ||| ||||| ||| |||||   |||||||||| ||| ||||||||||||||||||||    
T  32768443 gtaggcaacgagatgacaacgagacccttgccaattgcaacatccaagagaagtcaa 32768499  T

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Target: chr5; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 10 - 174
Target Start/End: Original strand, 25477756 - 25477920
Alignment:
Q  10 ccccctgagggttgagagttcagacacaataatgaatgtgaagaagaagattcttgacaaggaagatatcgcagtgcaccagcaacgtctgatatttgac 109  Q
    |||| |||||||| ||||||||||||| |||   | ||||||| |||||||| ||||||||||| |   |  |||| || | |||||||||||||||  |    
T  25477756 ccccttgagggttaagagttcagacacgatagacagtgtgaaggagaagatttttgacaaggaaaagtaccaagtgaacgatcaacgtctgatattttcc 25477855  T
Q  110 ggtaagcaactagaggacaatcggacccttgccgattacaacatccaagagaagtcaaccatcca 174  Q
    |||||||||||||| |||   | |||| ||||| |||||||||||||||||||||||||||||||    
T  25477856 ggtaagcaactagacgactgccagaccattgccaattacaacatccaagagaagtcaaccatcca 25477920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 10 - 174
Target Start/End: Complemental strand, 32557527 - 32557363
Alignment:
Q  10 ccccctgagggttgagagttcagacacaataatgaatgtgaagaagaagattcttgacaaggaagatatcgcagtgcaccagcaacgtctgatatttgac 109  Q
    |||| ||| ||| |||||||||||||| |||   ||||||||| | ||||||||||||||||||   ||| |||||||||| ||||||||||| |||| |    
T  32557527 ccccttgaaggtggagagttcagacacgatagcaaatgtgaaggataagattcttgacaaggaaacgatcccagtgcaccaacaacgtctgatgtttgcc 32557428  T
Q  110 ggtaagcaactagaggacaatcggacccttgccgattacaacatccaagagaagtcaaccatcca 174  Q
      ||||| |||||| ||||  |  ||||||||| |||||||||||||||||||| ||||| ||||    
T  32557427 aataagctactagatgacagccatacccttgcctattacaacatccaagagaaggcaaccctcca 32557363  T

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Target: chr5; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 168
Target Start/End: Complemental strand, 32655736 - 32655587
Alignment:
Q  19 ggttgagagttcagacacaataatgaatgtgaagaagaagattcttgacaaggaagatatcgcagtgcaccagcaacgtctgatatttgacggtaagcaa 118  Q
    |||| ||||||||||||||||| |  ||||||||||||||||||  ||||||||||  ||| | |||||| |||| ||||||   ||||   ||||||||    
T  32655736 ggttaagagttcagacacaatactcgatgtgaagaagaagattcaggacaaggaagggatcccggtgcacgagcagcgtctggactttgctagtaagcaa 32655637  T
Q  119 ctagaggacaatcggacccttgccgattacaacatccaagagaagtcaac 168  Q
    |||||| || | |  |||||||||  |||||||||||||||||| |||||    
T  32655636 ctagagaaccaccaaacccttgccagttacaacatccaagagaaatcaac 32655587  T

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Target: chr5; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 44 - 171
Target Start/End: Complemental strand, 32651446 - 32651319
Alignment:
Q  44 aatgtgaagaagaagattcttgacaaggaagatatcgcagtgcaccagcaacgtctgatatttgacggtaagcaactagaggacaatcggacccttgccg 143  Q
    ||||||||| |||||||| ||||| ||||| | | | ||||| || | |||||| |||| ||||  ||||| ||||||||||||   |||| ||||||||    
T  32651446 aatgtgaaggagaagattgttgacgaggaaaagaccccagtgtacgaccaacgtttgatctttgctggtaaacaactagaggacggccggatccttgccg 32651347  T
Q  144 attacaacatccaagagaagtcaaccat 171  Q
    |||||| ||||||||| |||||||||||    
T  32651346 attacatcatccaagataagtcaaccat 32651319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 155
Target Start/End: Original strand, 32752167 - 32752298
Alignment:
Q  24 agagttcagacacaataatgaatgtgaagaagaagattcttgacaaggaagatatcgcagtgcaccagcaacgtctgatatttgacggtaagcaactaga 123  Q
    ||||||||||||| ||| |  ||||||||||||| |||| |||||||||||  ||| ||||||||||||| |||||  | ||||||||||||| | || |    
T  32752167 agagttcagacacgatactcgatgtgaagaagaaaattcatgacaaggaagggatcccagtgcaccagcagcgtctattctttgacggtaagccaataaa 32752266  T
Q  124 ggacaatcggacccttgccgattacaacatcc 155  Q
    ||||   | ||| |||||| ||||||||||||    
T  32752267 ggaccgccagactcttgccaattacaacatcc 32752298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 111 - 169
Target Start/End: Complemental strand, 32660623 - 32660565
Alignment:
Q  111 gtaagcaactagaggacaatcggacccttgccgattacaacatccaagagaagtcaacc 169  Q
    |||||||||| |||||| || ||||||||||||||||||||||||||||| ||||||||    
T  32660623 gtaagcaacttgaggacgattggacccttgccgattacaacatccaagagcagtcaacc 32660565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 168
Target Start/End: Original strand, 32748109 - 32748267
Alignment:
Q  10 ccccctgagggttgagagttcagacacaataatgaatgtgaagaagaagattcttgacaaggaagatatcgcagtgcaccagcaacgtctgatatttgac 109  Q
    |||||||| |||| ||||||||||||| ||| | ||||||||||| ||| |||  ||||||||||  ||| | || ||||| ||||||||| | |||  |    
T  32748109 ccccctgatggttaagagttcagacacgatactcaatgtgaagaaaaaggttcaggacaaggaagggatccctgtccaccaacaacgtctgttcttttcc 32748208  T
Q  110 ggtaagcaactagaggacaatcggacccttgccgattacaacatccaagagaagtcaac 168  Q
       |||||||||||| ||   | ||||||||||  ||||||||||||||||||||||||    
T  32748209 aagaagcaactagagaaccgccagacccttgccagttacaacatccaagagaagtcaac 32748267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 116
Target Start/End: Original strand, 32755696 - 32755802
Alignment:
Q  10 ccccctgagggttgagagttcagacacaataatgaatgtgaagaagaagattcttgacaaggaagatatcgcagtgcaccagcaacgtctgatatttgac 109  Q
    |||||| | |||| ||||||||||||| ||| || ||||||| ||||| |||| |||||||||||  ||| ||||||||||||| |||||  | ||||||    
T  32755696 ccccctcatggttaagagttcagacacgatactggatgtgaaaaagaaaattcatgacaaggaagggatcccagtgcaccagcagcgtctattctttgac 32755795  T
Q  110 ggtaagc 116  Q
    |||||||    
T  32755796 ggtaagc 32755802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 169
Target Start/End: Original strand, 32710587 - 32710746
Alignment:
Q  10 ccccctgagggttgagagttcagacacaataatgaatgtgaagaagaagattcttgacaaggaagatatcgcagtgcaccagcaacgtctgatatttgac 109  Q
    |||||||| ||| ||||||||| ||||||||   ||  |||||  ||||||||  || ||||||   ||| ||||| | |||||| ||||||| |||| |    
T  32710587 ccccctgaaggtggagagttcatacacaatagcaaacttgaaggcgaagattcgagagaaggaaagaatcccagtggatcagcaatgtctgatctttgcc 32710686  T
Q  110 ggtaagcaactagaggacaatcggacccttgccgattacaacatccaagagaagtcaacc 169  Q
     ||||| ||||||  |||  || |||||||||| ||||||||||||||||||||||||||    
T  32710687 agtaaggaactagctgactgtcagacccttgccaattacaacatccaagagaagtcaacc 32710746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 32858859 - 32858914
Alignment:
Q  18 gggttgagagttcagacacaataatgaatgtgaagaagaagattcttgacaaggaa 73  Q
    ||||| ||||||||||||| ||| | ||||||||| ||| ||||||||||||||||    
T  32858859 gggttaagagttcagacacgatagtcaatgtgaaggagatgattcttgacaaggaa 32858914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 169
Target Start/End: Original strand, 37577556 - 37577711
Alignment:
Q  14 ctgagggttgagagttcagacacaataatgaatgtgaagaagaagattcttgacaaggaagatatcgcagtgcaccagcaacgtctgatatttgacggta 113  Q
    |||||| || ||||||||||||| |||    |||||||| |||||||||||||||| ||||  ||| || ||||   |||||||||||| |||| |||||    
T  37577556 ctgaggattaagagttcagacacgatagccgatgtgaaggagaagattcttgacaatgaagggatcccaatgcatatgcaacgtctgatctttgccggta 37577655  T
Q  114 agcaactagaggacaatcggacccttgccgattacaacatccaagagaagtcaacc 169  Q
    || |||||||  | |  | |||||||||| ||||| ||||||||||||||||||||    
T  37577656 aggaactagataatagcctgacccttgccaattaccacatccaagagaagtcaacc 37577711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 102
Target Start/End: Original strand, 32895072 - 32895164
Alignment:
Q  10 ccccctgagggttgagagttcagacacaataatgaatgtgaagaagaagattcttgacaaggaagatatcgcagtgcaccagcaacgtctgat 102  Q
    |||||||| |||| ||||||||||||  ||| | ||||| | | ||||||||||||| |||||||||||| |||||||| | ||| |||||||    
T  32895072 ccccctgatggttaagagttcagacaggatattcaatgtaatggagaagattcttgagaaggaagatatcccagtgcacaatcaatgtctgat 32895164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 174
Target Start/End: Complemental strand, 7969547 - 7969388
Alignment:
Q  18 gggttgagagttcagacacaataatgaatgtgaagaagaagattcttgacaagga---agatatcgcagtgcaccagcaacgtctgatatttgacggtaa 114  Q
    ||||| |||||||||||||||||   ||||||||| |||||||| | |||||| |   ||||  |  ||| |||  |||||||||||| |||| | ||||    
T  7969547 gggttaagagttcagacacaataggcaatgtgaaggagaagattttcgacaagaataaagattaccaagtacacgtgcaacgtctgatctttgccagtaa 7969448  T
Q  115 gcaactagaggacaatcggacccttgccgattacaacatccaagagaagtcaaccatcca 174  Q
    |||| |||| ||||  | |||| ||||| ||| |||||||||||||| ||||||| ||||    
T  7969447 gcaattagatgacagcctgaccattgccaattgcaacatccaagagaggtcaaccctcca 7969388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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