View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14995_low_1 (Length: 566)

Name: NF14995_low_1
Description: NF14995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14995_low_1
NF14995_low_1
[»] chr1 (5 HSPs)
chr1 (9-549)||(3306741-3307281)
chr1 (408-549)||(6699515-6699659)
chr1 (410-528)||(17892894-17893009)
chr1 (199-295)||(33834250-33834347)
chr1 (199-295)||(33912803-33912900)
[»] chr6 (1 HSPs)
chr6 (409-480)||(33167931-33168002)
[»] chr5 (2 HSPs)
chr5 (410-484)||(11314877-11314951)
chr5 (470-535)||(11600795-11600859)
[»] chr2 (2 HSPs)
chr2 (477-547)||(13530612-13530682)
chr2 (14-56)||(16549593-16549635)
[»] chr8 (4 HSPs)
chr8 (410-530)||(3403719-3403839)
chr8 (430-484)||(14599465-14599519)
chr8 (516-549)||(27134648-27134681)
chr8 (410-470)||(42354098-42354159)
[»] chr4 (2 HSPs)
chr4 (508-549)||(46737409-46737450)
chr4 (477-549)||(29927283-29927355)
[»] chr7 (5 HSPs)
chr7 (402-434)||(34850822-34850854)
chr7 (385-464)||(23803335-23803414)
chr7 (433-494)||(4656112-4656173)
chr7 (408-520)||(6803188-6803300)
chr7 (519-547)||(46347127-46347155)
[»] chr3 (3 HSPs)
chr3 (515-549)||(42225959-42225993)
chr3 (433-528)||(23917109-23917207)
chr3 (519-547)||(53466211-53466239)


Alignment Details
Target: chr1 (Bit Score: 521; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 9 - 549
Target Start/End: Complemental strand, 3307281 - 3306741
Alignment:
Q  9 attattcttgaagttattggtcttgtgacaattgaagcatttatactttgttttttcattcccctttgattttgatttagcacaatttcctccactcact 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3307281 attattcttgaagttattggtcttgtgacaattgaagcatttatactttgttttttcattcccctttgattttgatttagcacaatttcctccactcact 3307182  T
Q  109 tcttcctttggagacacttgagtcttcccccattacgtaccttccaccttcaagtcttgaaacttggttaactctttggccctaatggatgattggacca 208  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3307181 tcttcctttggagacactcgagtcttcccccattacgtaccttccaccttcaagtcttgaaacttggttaactctttggccctaatggatgattggacca 3307082  T
Q  209 cctcaaaggcaataatggtttcctttccttaaaggaatgcatccttaaaatgttcaaaagatctaggcaacgaactcaataagagtagaacttcaacctc 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3307081 cctcaaaggcaataatggtttcctttccttaaaggaatgcatccttaaaatgttcaaaagatctaggcaacgaactcaataagagtagaacttcaacctc 3306982  T
Q  309 atcatcaagtttcaattcaatattttccatatcattgatgttgaaatttgtcaatttctcgaaattagattttgggaaatactaataagtgtccttaatg 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3306981 atcatcaagtttcaattcaatattttccatatcattgatgttgaaatttgtcaatttctcgaaattagattttgggaaatactaataagtgtccttaatg 3306882  T
Q  409 tattgtttaagcaactaaaaagaataacttttgtatagaaagtgatgtaattattaatttgaaactactttgacttggatttccaagacatatttattat 508  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  3306881 tattgtttaagcaactaaaaagaataacttttgcatagaaagtgatgtaattattagtttgaaactactttgacttggatttccaagacatatttattat 3306782  T
Q  509 ttgtgtattccttaaacaatgtctttaagacacttgttagc 549  Q
    |||||||||| |||||||||||||||| |||||||||||||    
T  3306781 ttgtgtattctttaaacaatgtctttaggacacttgttagc 3306741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 408 - 549
Target Start/End: Complemental strand, 6699659 - 6699515
Alignment:
Q  408 gtattgtttaagcaactaaaaaga--ataacttttgtatagaaagtgatgtaattattaatttgaaactactttgacttgg-atttccaagacatattta 504  Q
    ||||||||||||||||||||||||  ||||  ||||  ||||| ||| ||||||||||| ||| | |||| ||| |||| | |||| | | ||| ||||     
T  6699659 gtattgtttaagcaactaaaaagagtataatatttgcgtagaaggtggtgtaattattactttaagactattttaacttagtattttcgaaacaaatttt 6699560  T
Q  505 ttatttgtgtattccttaaacaatgtctttaagacacttgttagc 549  Q
     ||||||||||||||||| |||||||  |||| ||||||||||||    
T  6699559 ctatttgtgtattccttatacaatgttattaaaacacttgttagc 6699515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 410 - 528
Target Start/End: Original strand, 17892894 - 17893009
Alignment:
Q  410 attgtttaagcaactaaaaagaataacttttgtatagaaagtgatgtaattattaatttgaaactactttgacttggatttccaagacatatttattatt 509  Q
    ||||||||||||||||||||   ||||||||  ||| |||| ||||||||||||| ||| | | |||||||||||  |||| ||||| | | ||  ||||    
T  17892894 attgtttaagcaactaaaaa---taacttttacatataaagcgatgtaattattactttaagattactttgacttatattttcaagataaaatttatatt 17892990  T
Q  510 tgtgtattccttaaacaat 528  Q
    |||||||| ||||||||||    
T  17892991 tgtgtattgcttaaacaat 17893009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 199 - 295
Target Start/End: Complemental strand, 33834347 - 33834250
Alignment:
Q  199 gattggaccacctcaaaggcaata-atggtttcctttccttaaaggaatgcatccttaaaatgttcaaaagatctaggcaacgaactcaataagagta 295  Q
    |||||||||||||| |||| |||| |||| ||| ||| | ||||| | ||||||||| ||||||||||||||| | || ||| ||||||| |||||||    
T  33834347 gattggaccacctccaaggtaatatatggattcattttcataaagaagtgcatccttgaaatgttcaaaagatttgggtaacaaactcaacaagagta 33834250  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 199 - 295
Target Start/End: Complemental strand, 33912900 - 33912803
Alignment:
Q  199 gattggaccacctcaaaggcaata-atggtttcctttccttaaaggaatgcatccttaaaatgttcaaaagatctaggcaacgaactcaataagagta 295  Q
    |||||||||||||| |||| |||| |||| ||| ||| | ||||| | ||||||||| ||||||||||||||| | || ||| ||||||| |||||||    
T  33912900 gattggaccacctccaaggtaatatatggattcattttcataaagaagtgcatccttgaaatgttcaaaagatttgggtaacaaactcaacaagagta 33912803  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 409 - 480
Target Start/End: Original strand, 33167931 - 33168002
Alignment:
Q  409 tattgtttaagcaactaaaaagaataacttttgtatagaaagtgatgtaattattaatttgaaactactttg 480  Q
    ||||||||||| || |||||||||||| ||||| ||||||| | |||||||||||| ||||| |||||||||    
T  33167931 tattgtttaagaaaataaaaagaataatttttgcatagaaaataatgtaattattactttgagactactttg 33168002  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 410 - 484
Target Start/End: Complemental strand, 11314951 - 11314877
Alignment:
Q  410 attgtttaagcaactaaaaagaataacttttgtatagaaagtgatgtaattattaatttgaaactactttgactt 484  Q
    ||||||||| ||| |||||||| ||||||||||||| ||| |||| ||||| ||| |||||||||| ||||||||    
T  11314951 attgtttaaacaattaaaaagagtaacttttgtataaaaaatgatttaattgttattttgaaactaatttgactt 11314877  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 535
Target Start/End: Original strand, 11600795 - 11600859
Alignment:
Q  470 aaactactttgacttggatttccaagacatatttattatttgtgtattccttaaacaatgtcttta 535  Q
    |||||||||||||||  |||||||| |||  |||  ||||||||||||||||||||||||| ||||    
T  11600795 aaactactttgacttt-atttccaatacaatttttctatttgtgtattccttaaacaatgttttta 11600859  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 477 - 547
Target Start/End: Original strand, 13530612 - 13530682
Alignment:
Q  477 tttgacttggatttccaagacatatttattatttgtgtattccttaaacaatgtctttaagacacttgtta 547  Q
    ||||||||| |||| ||||||| | || || |||||| ||||||| ||||||||| |||||||||||||||    
T  13530612 tttgacttgtattttcaagacaaactttttttttgtggattcctttaacaatgtccttaagacacttgtta 13530682  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 16549635 - 16549593
Alignment:
Q  14 tcttgaagttattggtcttgtgacaattgaagcatttatactt 56  Q
    ||||||||| ||||||||||||||||||||||||||| |||||    
T  16549635 tcttgaagtgattggtcttgtgacaattgaagcatttgtactt 16549593  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 410 - 530
Target Start/End: Complemental strand, 3403839 - 3403719
Alignment:
Q  410 attgtttaagcaactaaaaagaataacttttgtatagaaagtgatgtaattattaatttgaaactactttgacttggatttccaaga-catatttattat 508  Q
    |||||||||||||||| |   ||||| |||||| |  ||| |||| ||||||||| ||||| |||||||||||||| | || |||||  | ||||||| |    
T  3403839 attgtttaagcaactatagtaaataaattttgtctgaaaaatgatataattattattttgagactactttgacttgtaattacaagataaaatttatt-t 3403741  T
Q  509 ttgtgtattccttaaacaatgt 530  Q
    ||||| ||||||||||||||||    
T  3403740 ttgtgaattccttaaacaatgt 3403719  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 430 - 484
Target Start/End: Original strand, 14599465 - 14599519
Alignment:
Q  430 gaataacttttgtatagaaagtgatgtaattattaatttgaaactactttgactt 484  Q
    ||||||| ||||||||||||   |||||||||||| ||| |||||||||||||||    
T  14599465 gaataacatttgtatagaaaacaatgtaattattactttaaaactactttgactt 14599519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 516 - 549
Target Start/End: Original strand, 27134648 - 27134681
Alignment:
Q  516 ttccttaaacaatgtctttaagacacttgttagc 549  Q
    |||||||||||||||||||| |||||||||||||    
T  27134648 ttccttaaacaatgtctttaggacacttgttagc 27134681  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 470
Target Start/End: Original strand, 42354098 - 42354159
Alignment:
Q  410 attgtttaagcaactaaaaagaataacttttgtatagaaag-tgatgtaattattaatttga 470  Q
    |||||||||| ||||||||| || ||||||| |||| || | ||||||||||||||||||||    
T  42354098 attgtttaagaaactaaaaaaaacaacttttatataaaagggtgatgtaattattaatttga 42354159  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 508 - 549
Target Start/End: Complemental strand, 46737450 - 46737409
Alignment:
Q  508 tttgtgtattccttaaacaatgtctttaagacacttgttagc 549  Q
    ||||||| |||||||||||||||| |||||||||||||||||    
T  46737450 tttgtgtgttccttaaacaatgtccttaagacacttgttagc 46737409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 477 - 549
Target Start/End: Complemental strand, 29927355 - 29927283
Alignment:
Q  477 tttgacttggatttccaagacatatttattatttgtgtattccttaaacaatgtctttaagacacttgttagc 549  Q
    ||||||||| |||||||||||| | ||  | |||||| ||||||||||||||| | ||| | |||||||||||    
T  29927355 tttgacttgtatttccaagacaaagtttctttttgtggattccttaaacaatgcccttagggcacttgttagc 29927283  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 402 - 434
Target Start/End: Original strand, 34850822 - 34850854
Alignment:
Q  402 cttaatgtattgtttaagcaactaaaaagaata 434  Q
    |||||||||||||||||||||||||||||||||    
T  34850822 cttaatgtattgtttaagcaactaaaaagaata 34850854  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 464
Target Start/End: Original strand, 23803335 - 23803414
Alignment:
Q  385 aaatactaataagtgtccttaatgtattgtttaagcaactaaaaagaataacttttgtatagaaagtgatgtaattatta 464  Q
    |||| ||||||||||| ||| ||| |||||||||||||| ||||| ||||  ||||||||| ||| | || |||||||||    
T  23803335 aaatgctaataagtgttcttgatgcattgtttaagcaacaaaaaataatattttttgtataaaaatttatataattatta 23803414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 494
Target Start/End: Complemental strand, 4656173 - 4656112
Alignment:
Q  433 taacttttgtatagaaagtgatgtaattattaatttgaaactactttgacttggatttccaa 494  Q
    ||||||||| |||||||  ||||||||||||| || || |||||||| ||||| ||||||||    
T  4656173 taacttttgcatagaaaaagatgtaattattacttcgagactactttaacttgtatttccaa 4656112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 408 - 520
Target Start/End: Complemental strand, 6803300 - 6803188
Alignment:
Q  408 gtattgtttaagcaactaaaaagaataacttttgtatagaaagtgatgtaattattaatttgaaactactttgacttggatttccaagacatatttatta 507  Q
    |||||||||||||| ||||| ||| |||||| || ||| ||| |||| ||| | ||| ||||| |||| ||||||||| |||| ||| ||| || |  ||    
T  6803300 gtattgtttaagcacctaaatagagtaacttatgcataaaaattgatataaatgttactttgagactattttgacttgcattttcaaaacaaatgttcta 6803201  T
Q  508 tttgtgtattcct 520  Q
    ||| |||||||||    
T  6803200 tttatgtattcct 6803188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 519 - 547
Target Start/End: Original strand, 46347127 - 46347155
Alignment:
Q  519 cttaaacaatgtctttaagacacttgtta 547  Q
    |||||||||||||||||||||||||||||    
T  46347127 cttaaacaatgtctttaagacacttgtta 46347155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 515 - 549
Target Start/End: Complemental strand, 42225993 - 42225959
Alignment:
Q  515 attccttaaacaatgtctttaagacacttgttagc 549  Q
    ||||||||||||||||||||| |||||||||||||    
T  42225993 attccttaaacaatgtctttaggacacttgttagc 42225959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 433 - 528
Target Start/End: Original strand, 23917109 - 23917207
Alignment:
Q  433 taacttttgtatagaaagtgatgta---attattaatttgaaactactttgacttggatttccaagacatatttattatttgtgtattccttaaacaat 528  Q
    |||||||||| |||||| |||||||   ||||||| ||||||| |||||| ||||| |||||  | ||| | || | |||||||||||| |||||||||    
T  23917109 taacttttgtttagaaaatgatgtaattattattactttgaaattactttaacttgtatttctgaaacaaaattttaatttgtgtattctttaaacaat 23917207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 519 - 547
Target Start/End: Complemental strand, 53466239 - 53466211
Alignment:
Q  519 cttaaacaatgtctttaagacacttgtta 547  Q
    |||||||||||||||||||||||||||||    
T  53466239 cttaaacaatgtctttaagacacttgtta 53466211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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