View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14995_low_5 (Length: 282)
Name: NF14995_low_5
Description: NF14995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14995_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 12 - 276
Target Start/End: Original strand, 28094494 - 28094758
Alignment:
| Q |
12 |
aatacttcatattactctcaaactttgttaatggcaaatctgtgttaatccaattgtcccttagataccctgcactccaaagactactctttgccttcgg |
111 |
Q |
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| T |
28094494 |
aatacttcatattactctcaaactttgttaatggcaaatctgtgttaatccaattgtcccttagataccctgcactccaaagactactctttgccttcgg |
28094593 |
T |
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| Q |
112 |
ttgtgtcgaatttctcggcttccaaacgcatataactctttttggtagcacctccgcaatagtcttatcaaaaacattatcatcttggtgaaccaagtac |
211 |
Q |
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| T |
28094594 |
ttgtgtcgaatttctcggcttccaaacgcatataactctttttggtagcacctctgcaatagtcttatcaaaaacattatcatcttggtgaaccaagtac |
28094693 |
T |
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| Q |
212 |
tcgcctaagttttcttcgaggtacttgtcgaattcgggtggatcattgtgaccaaactcagttct |
276 |
Q |
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| T |
28094694 |
tcgcctaagttttcttcgaggtacttgtcgaattcgggtggatcattgtgaccaaactcagttct |
28094758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 29 - 276
Target Start/End: Complemental strand, 26156246 - 26155999
Alignment:
| Q |
29 |
tcaaactttgttaatggcaaatctgtgttaatccaattgtcccttagataccctgcactccaaagactactctttgccttcggttgtgtcgaatttctcg |
128 |
Q |
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| T |
26156246 |
tcaaacttggttgatggaagatctgtattaatccagttatccttcaaaaaccctgcactccacagagaactccctgctttaggctgtggcgatttactcg |
26156147 |
T |
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| Q |
129 |
gcttccaaacgcatataactctttttggtagcacctccgcaatagtcttatcaaaaacattatcatcttggtgaaccaagtactcgcctaagttttcttc |
228 |
Q |
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| T |
26156146 |
gcttccaaacgcatataaccctcttaggtaacaactccgaaatggtttttccaaaaacatgatcatcttgatgaatcaaaaactcacctaattgttcttc |
26156047 |
T |
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| Q |
229 |
gaggtacttgtcgaattcgggtggatcattgtgaccaaactcagttct |
276 |
Q |
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| T |
26156046 |
cagatacttatcaaattcaggtggatcatcatgaccaaattctgttct |
26155999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 29 - 276
Target Start/End: Complemental strand, 26169544 - 26169297
Alignment:
| Q |
29 |
tcaaactttgttaatggcaaatctgtgttaatccaattgtcccttagataccctgcactccaaagactactctttgccttcggttgtgtcgaatttctcg |
128 |
Q |
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|||||||| ||| |||| | |||||| |||||||| || ||| | | | ||||||||||||| ||| |||| ||| || || |||| ||| || |||| |
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| T |
26169544 |
tcaaacttggttgatggaagatctgtattaatccagttatccttcaaaaaccctgcactccacagagaactccctgctttaggctgtggcgatttactcg |
26169445 |
T |
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| Q |
129 |
gcttccaaacgcatataactctttttggtagcacctccgcaatagtcttatcaaaaacattatcatcttggtgaaccaagtactcgcctaagttttcttc |
228 |
Q |
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||||||||||||||||||| || || |||| || ||||| ||| || || ||||||||| ||||||||| |||| ||| |||| ||||| | |||||| |
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| T |
26169444 |
gcttccaaacgcatataaccctcttaggtaacaactccgaaatggtttttccaaaaacatgatcatcttgatgaatcaaaaactcacctaattgttcttc |
26169345 |
T |
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| Q |
229 |
gaggtacttgtcgaattcgggtggatcattgtgaccaaactcagttct |
276 |
Q |
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|| ||||| || ||||| |||||||||| |||||||| || ||||| |
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| T |
26169344 |
cagatacttatcaaattcaggtggatcatcatgaccaaattctgttct |
26169297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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