View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14996_high_2 (Length: 506)
Name: NF14996_high_2
Description: NF14996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14996_high_2 |
 | |
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| [»] chr5 (18 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 18)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 170 - 506
Target Start/End: Complemental strand, 3299965 - 3299629
Alignment:
| Q |
170 |
gcatcttccttgtttttgttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtggatcatccatcaagcaaatcctccaat |
269 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3299965 |
gcatcttccttgttttggttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtggatcatccatcaagcaaatcctccaat |
3299866 |
T |
|
| Q |
270 |
ggataaaaaggtcttctaaagggggatttgatggttgtgtcaaatggatggcagttggttcgatttcggtagattgctcttcggtcgaagaggagtttag |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3299865 |
ggataaaaaggtcttctaaagggggatttgatggttgtgtcaaatggatggcagttggttcgatttcggtagattgctcttcggtcgaagaggagtttag |
3299766 |
T |
|
| Q |
370 |
tgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttgggcataactaatctt |
469 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |
|
|
| T |
3299765 |
tgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttcggcataactaatttt |
3299666 |
T |
|
| Q |
470 |
ggtgatcaaaatggcagcaggaaggtttgtatctact |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3299665 |
ggtgatcaaaatggcagcaggaaggtttgtatctact |
3299629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 170 - 506
Target Start/End: Complemental strand, 3392858 - 3392522
Alignment:
| Q |
170 |
gcatcttccttgtttttgttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtggatcatccatcaagcaaatcctccaat |
269 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3392858 |
gcatcttccttgttttggttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtggatcatccatcaagcaaatcctccaat |
3392759 |
T |
|
| Q |
270 |
ggataaaaaggtcttctaaagggggatttgatggttgtgtcaaatggatggcagttggttcgatttcggtagattgctcttcggtcgaagaggagtttag |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3392758 |
ggataaaaaggtcttctaaagggggatttgatggttgtgtcaaatggatggcagttggttcgatttcggtagattgctcttcggtcgaagaggagtttag |
3392659 |
T |
|
| Q |
370 |
tgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttgggcataactaatctt |
469 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |
|
|
| T |
3392658 |
tgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttcggcataactaatttt |
3392559 |
T |
|
| Q |
470 |
ggtgatcaaaatggcagcaggaaggtttgtatctact |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3392558 |
ggtgatcaaaatggcagcaggaaggtttgtatctact |
3392522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 170 - 483
Target Start/End: Original strand, 1163360 - 1163676
Alignment:
| Q |
170 |
gcatcttccttgtttttgttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtggatcatc---catcaagcaaatcctcc |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
1163360 |
gcatcttccttgtttttgttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtagatcatcatccatcaagcaaatcctcc |
1163459 |
T |
|
| Q |
267 |
aatggataaaaaggtcttctaaagggggatttgatggttgtgtcaaatggatggcagttggttcgatttcggtagattgctcttcggtcgaagaggagtt |
366 |
Q |
| |
|
|||||| |||||||||| |||||||||| ||| | || | || |||||||||||| |||| |||||||||||||||||||| ||||||||||||||| |
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|
| T |
1163460 |
aatggaaaaaaaggtctataaaagggggatctgaagagtgggccagatggatggcagtaggttggatttcggtagattgctctttggtcgaagaggagtt |
1163559 |
T |
|
| Q |
367 |
tagtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttgggcataactaat |
466 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
1163560 |
tagggtcttgttgtagatcttttaagaagagttgataaccagattcccacttatcctgaacaggaacaactctaccattctcctctttagcaaaactaat |
1163659 |
T |
|
| Q |
467 |
cttggtgatcaaaatgg |
483 |
Q |
| |
|
|||||| |||||||||| |
|
|
| T |
1163660 |
cttggtaatcaaaatgg |
1163676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 238 - 483
Target Start/End: Complemental strand, 1850293 - 1850063
Alignment:
| Q |
238 |
aagtggatcatccatcaagcaaatcctccaatggataaaaaggtcttctaaagggggatttgatggttgtgtcaaatggatggcagttggttcgatttcg |
337 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| || | || ||||||||||||||||| ||||||| |
|
|
| T |
1850293 |
aagtagatcatccatcaagcaaatcctccaatggataaaaaggtcttctaaaaggggatctgatgggtgggccagatggatggcagttggttggatttcg |
1850194 |
T |
|
| Q |
338 |
gtagattgctcttcggtcgaagaggagtttagtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaacaact |
437 |
Q |
| |
|
|| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
1850193 |
gt---------------cgaagaggagtttagggtcttgttgtaaatcttttaagaagagttgataatcagattcccacttatcctgaacaggaataact |
1850109 |
T |
|
| Q |
438 |
ctaccattctcctcttgggcataactaatcttggtgatcaaaatgg |
483 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||| |||||||||| |
|
|
| T |
1850108 |
ctaccattctcctctttagcaaaactaatcttggtaatcaaaatgg |
1850063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 185 - 496
Target Start/End: Complemental strand, 40418712 - 40418404
Alignment:
| Q |
185 |
ttgttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtggatcatccatcaagcaaatcctccaatggataaaaaggtctt |
284 |
Q |
| |
|
|||||||||||| |||||||||| || | ||||||| |||||||||||| |||| | |||||||| |||||||| |||||||||||| ||||||||| |
|
|
| T |
40418712 |
ttgttattggaacaaacaaaacattaacaaaagtgatttttgtttaagctagtaactagatcatccgtcaagcaagtcctccaatggaacaaaaggtctg |
40418613 |
T |
|
| Q |
285 |
ctaaagggggattt-gatggttgtgtcaaatggatggcagttggttcgatttcggtagattgctcttcggtcgaagaggagtttagtgtcttgttgtaga |
383 |
Q |
| |
|
|| |||||||| || || ||| ||| | || |||||| ||| ||||||| ||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
40418612 |
gtag-gggggattacgaagggcccatcatatgtgtagcttttggtttgatctcggtaggctgctcttacgttgaagaggagtttagtgtcttgttgtaga |
40418514 |
T |
|
| Q |
384 |
tcttttaagaagagttgataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttgggcataactaatcttggtgatcaaaatgg |
483 |
Q |
| |
|
|| || |||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
40418513 |
tcattgaagaagagttgataatcagattcccacttatcatgaagagcaacaactctaccatt---ctcttcggcataactaatcttggtgatcaaaatgg |
40418417 |
T |
|
| Q |
484 |
cagcaggaaggtt |
496 |
Q |
| |
|
||||||||||||| |
|
|
| T |
40418416 |
cagcaggaaggtt |
40418404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 202 - 496
Target Start/End: Complemental strand, 39880232 - 39879941
Alignment:
| Q |
202 |
aaaacatcaatagaagtgatgtttgtttaagcttgtaagtggatcatccatcaagcaaatcctccaatggataaaaaggtcttctaaagggggatt-tga |
300 |
Q |
| |
|
|||||||||| | ||||||| |||||||||||| |||| | |||||||| |||||||| |||||||||||| |||||||||| || |||||||| ||| |
|
|
| T |
39880232 |
aaaacatcaacaaaagtgatttttgtttaagctagtaactagatcatccgtcaagcaagtcctccaatggaaaaaaaggtctggtag-gggggattctga |
39880134 |
T |
|
| Q |
301 |
tggttgtgtcaaatggatggcagttggttcgatttcggtagattgctcttcggtcgaagaggagtttagtgtcttgttgtagatcttttaagaagagttg |
400 |
Q |
| |
|
|| ||| ||| | || |||||| ||| ||||||| ||||||| | ||||| ||||||||||| |||||||||||| || ||||||||||| |
|
|
| T |
39880133 |
agggcccatcatatgtgtagcttttggtttgatctcggtaggctgctcttacgctgaagatgagtttagtgttttgttgtagatcattgaagaagagttg |
39880034 |
T |
|
| Q |
401 |
ataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttgggcataactaatcttggtgatcaaaatggcagcaggaaggtt |
496 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| | ||| |||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
39880033 |
ataatcagattcccacttatccttgacagcaacaactctaccatt---cacttcggcataactaatcttgctgatcaaaatggcagcaggaaggtt |
39879941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 179 - 496
Target Start/End: Complemental strand, 38988140 - 38987826
Alignment:
| Q |
179 |
ttgtttttgttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtggatcatccatcaagcaaatcctccaatggataaaaa |
278 |
Q |
| |
|
||||| |||||||||||| ||||||||||||| | ||||||| |||||||||||| || | | |||||||| |||||||| ||||||||||||| |||| |
|
|
| T |
38988140 |
ttgttgttgttattggaacaaacaaaacatcaacaaaagtgatttttgtttaagctagtgactagatcatccgtcaagcaagtcctccaatggatcaaaa |
38988041 |
T |
|
| Q |
279 |
ggtcttctaaagggggatttgatggttgtgtcaaatggatggcagttggttcgatttcggtagattgctcttcggtcgaagaggagtttagtgtcttgtt |
378 |
Q |
| |
|
||||| || |||| | || || |||| ||| | | |||| || ||||||||||| |||| || | |||||| |||| || |||||||| |
|
|
| T |
38988040 |
ggtctggtaggggggtctacgaagggcccgtcatatgtgtagtggttgtttggatttcggtaggctgctgttatcttgaagagtagttgagggtcttgtt |
38987941 |
T |
|
| Q |
379 |
gtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttgggcataactaatcttggtgatcaa |
478 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||| |||||||||||||||| ||||||| |
|
|
| T |
38987940 |
gtagatcattgaagaagagttgataatcagattcccacttatccttgacagcaacaactctaccatt---cacttcggcataactaatcttgctgatcaa |
38987844 |
T |
|
| Q |
479 |
aatggcagcaggaaggtt |
496 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
38987843 |
aatggcagcaggaaggtt |
38987826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 1163208 - 1163302
Alignment:
| Q |
18 |
tgggaagcacgatcaacacacataacttgttctaataaacataaatatcaaacagaaattgcaaattgcaacaaagtaagttgttcttgttatcg |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1163208 |
tgggaagcacgatcaacacacataacttgttctaataaacataaatatcaaacagaaattgcaaattgcaacaaagtaagttgttcttgttatcg |
1163302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 356 - 496
Target Start/End: Complemental strand, 39726682 - 39726545
Alignment:
| Q |
356 |
gaagaggagtttagtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttgg |
455 |
Q |
| |
|
|||||| |||| || ||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||| | |
|
|
| T |
39726682 |
gaagagtagttgagggtcttgttgtagatcattgaagaagagttgataatcagattcccacttatccttgacagcaacaactctaccatt---cacttcg |
39726586 |
T |
|
| Q |
456 |
gcataactaatcttggtgatcaaaatggcagcaggaaggtt |
496 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
39726585 |
gcataactaatcttgctgatcaaaatggcagcaggaaggtt |
39726545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 368 - 495
Target Start/End: Complemental strand, 39169101 - 39168974
Alignment:
| Q |
368 |
agtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaacaac---tctaccattctcctcttgggcataacta |
464 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||| ||||||| ||||||||| || || | |||||||| |
|
|
| T |
39169101 |
agtgtcttgttgtagatcttttaaaaagagttgataatcagattcccacttaccctcaacaacaacaacaattctaccattttcttcat---cataacta |
39169005 |
T |
|
| Q |
465 |
atcttggtgatcaaaatggcagcaggaaggt |
495 |
Q |
| |
|
||||||| |||||||| ||||||||||||| |
|
|
| T |
39169004 |
ctcttggtaatcaaaattgcagcaggaaggt |
39168974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 34 - 98
Target Start/End: Complemental strand, 3300088 - 3300024
Alignment:
| Q |
34 |
cacacataacttgttctaataaacataaatatcaaacagaaattgcaaattgcaacaaagtaagt |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
3300088 |
cacacataacttgttctaataaacataaatatcaaacagaaattgcaaattgcaacagagtaagt |
3300024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 34 - 98
Target Start/End: Complemental strand, 3392981 - 3392917
Alignment:
| Q |
34 |
cacacataacttgttctaataaacataaatatcaaacagaaattgcaaattgcaacaaagtaagt |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
3392981 |
cacacataacttgttctaataaacataaatatcaaacagaaattgcaaattgcaacagagtaagt |
3392917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 44 - 98
Target Start/End: Complemental strand, 1850444 - 1850390
Alignment:
| Q |
44 |
ttgttctaataaacataaatatcaaacagaaattgcaaattgcaacaaagtaagt |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1850444 |
ttgttctaataaacataaatatcaaacagaaattgtaaattgcaacaaagtaagt |
1850390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 38988324 - 38988246
Alignment:
| Q |
18 |
tgggaagcacgatcaacacacataacttgttct---------aataaacataaatatcaaacagaaattgcaaattgca |
87 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
38988324 |
tgggaagcaagatcaacacacataacttgttcttgtaatcggaataaacataaatatcaaacagaaattgcaaactgca |
38988246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 179 - 283
Target Start/End: Complemental strand, 39726863 - 39726755
Alignment:
| Q |
179 |
ttgtttttgttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtgg----atcatccatcaagcaaatcctccaatggata |
274 |
Q |
| |
|
||||| || ||||||||| ||||||||||||| | | ||||| |||||||||||| |||| | | ||||||| |||||||| ||||||||||||| |
|
|
| T |
39726863 |
ttgttgttattattggaacaaacaaaacatcaacaaaggtgatttttgtttaagctagtaactagctagatcatccgtcaagcaagtcctccaatggatc |
39726764 |
T |
|
| Q |
275 |
aaaaggtct |
283 |
Q |
| |
|
||||||||| |
|
|
| T |
39726763 |
aaaaggtct |
39726755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 40418899 - 40418824
Alignment:
| Q |
21 |
gaagcacgatcaacacacataacttgttct---------aataaacataaatatcaaacagaaattgcaaattgca |
87 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
40418899 |
gaagcacgatcaacacacgtaacttgttcttgtaatcggaataaacataaatatcaaacagaaattgcaaactgca |
40418824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 380 - 422
Target Start/End: Complemental strand, 39400084 - 39400042
Alignment:
| Q |
380 |
tagatcttttaagaagagttgataatcagattcccacttatcc |
422 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
39400084 |
tagatcttctaagaagagttgataatcagattgccacttatcc |
39400042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 51 - 87
Target Start/End: Complemental strand, 39880405 - 39880369
Alignment:
| Q |
51 |
aataaacataaatatcaaacagaaattgcaaattgca |
87 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |
|
|
| T |
39880405 |
aataaacataaatatcaaacagaaattgcaaactgca |
39880369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 96; Significance: 7e-47; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 363 - 496
Target Start/End: Original strand, 25912122 - 25912252
Alignment:
| Q |
363 |
agtttagtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttgggcataac |
462 |
Q |
| |
|
||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
25912122 |
agtttagggtcttgctgtagataatttaagaagagttgataatcagattcccacttatcctgaacagcaacaactctaccatt---ctcttcggcataac |
25912218 |
T |
|
| Q |
463 |
taatcttggtgatcaaaatggcagcaggaaggtt |
496 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |
|
|
| T |
25912219 |
taatcttggtgatcaaaatggcagcatgaaggtt |
25912252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 179 - 283
Target Start/End: Original strand, 25911942 - 25912046
Alignment:
| Q |
179 |
ttgtttttgttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtggatcatccatcaagcaaatcctccaatggataaaaa |
278 |
Q |
| |
|
||||| || ||||||||| ||||||||||||| | ||||||| |||||||||||| |||| | |||||||| |||||||| |||||||||||| |||| |
|
|
| T |
25911942 |
ttgttgttattattggaacaaacaaaacatcaacaaaagtgatttttgtttaagctagtaactagatcatccgtcaagcaagtcctccaatggaacaaaa |
25912041 |
T |
|
| Q |
279 |
ggtct |
283 |
Q |
| |
|
||||| |
|
|
| T |
25912042 |
ggtct |
25912046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 179 - 287
Target Start/End: Original strand, 44444435 - 44444543
Alignment:
| Q |
179 |
ttgtttttgttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtggatcatccatcaagcaaatcctccaatggataaaaa |
278 |
Q |
| |
|
||||||| ||||||||| ||||||||||||| | ||||||| ||||||||||||||||| | |||||||| |||||||| ||||| |||||| |||| |
|
|
| T |
44444435 |
ttgttttcgttattggagtaaacaaaacatcaacaaaagtgatttttgtttaagcttgtaactagatcatccgtcaagcaagtcctctaatggaacaaaa |
44444534 |
T |
|
| Q |
279 |
ggtcttcta |
287 |
Q |
| |
|
| ||||||| |
|
|
| T |
44444535 |
gatcttcta |
44444543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 373 - 433
Target Start/End: Original strand, 44444614 - 44444674
Alignment:
| Q |
373 |
cttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaac |
433 |
Q |
| |
|
|||||| ||||| ||||||||| |||| ||||||||||||| | |||||||||||| |||| |
|
|
| T |
44444614 |
cttgttttagatattttaagaaaagtttataatcagattccaatttatcctgaacaacaac |
44444674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 25911743 - 25911821
Alignment:
| Q |
18 |
tgggaagcacgatcaacacacataacttgttct---------aataaacataaatatcaaacagaaattgcaaattgca |
87 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
25911743 |
tgggaagcatgatcaacacacgtaacttgttcttgtaatcggaataaacataagtatcaaacagaaattgcaaactgca |
25911821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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