View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14996_low_1 (Length: 689)

Name: NF14996_low_1
Description: NF14996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14996_low_1
NF14996_low_1
[»] chr7 (5 HSPs)
chr7 (212-676)||(47298258-47298724)
chr7 (411-676)||(47291856-47292117)
chr7 (23-213)||(47297703-47297891)
chr7 (212-361)||(47291648-47291790)
chr7 (622-678)||(47284094-47284150)


Alignment Details
Target: chr7 (Bit Score: 369; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 212 - 676
Target Start/End: Original strand, 47298258 - 47298724
Alignment:
Q  212 aaaacttgatcacttgaatataaaaaaggaggatttgttatatatatggttcaaacttcaaaggttgtagcatcgttcccttctctcctctctaacagat 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  47298258 aaaacttgatcacttgaatataaaaaaggaggatttgttatatatatggttcaaacttcaaaggttgtagcatcattcccttctctcctctctaacagat 47298357  T
Q  312 ttgaatagaaccgagccatactaacaaaaacttacttctctaattttgaccaaat----caatacnnnnnnnnnnggtataatcaactgggcctaattaa 407  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||| || |    ||||||          |||||||||||||||||||||||||    
T  47298358 ttgaatagaaccgtgccatactaacaaaaacttacttctctaattttgactaattaagtcaatacaaaaaaag--ggtataatcaactgggcctaattaa 47298455  T
Q  408 gagactaaaacagatgcaaagcaacctaaggctaaataaaacagccgaaaataataacaacaaagaataggggctgacagaattataatatgaaaaccta 507  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  47298456 gagactaaaacagatgcaaagcagcctaaggctaaataaaacagccgaaaataataaaaacaaagaataggggctgacagaattataatatgaaaaccta 47298555  T
Q  508 tatactagttaatatatcacaataacaaacaggtctttcattataattatatagcacaaaagcccccaactttatttaacagcaatcacgacattacaat 607  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  47298556 tatactagttaatatatcacaataacaaacaggtctttcattatcattatatagcacacaagcccccaactttatttaacagcaatcacgacagtacaat 47298655  T
Q  608 tttacaaactacaacaaactataaggtagacatcgcaaaactaggaccactcggtgtaggatgattttg 676  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||    
T  47298656 tttacaaactacaacaaactataaggtagacatcgcaaaactaggagcactcaatgtaggatgattttg 47298724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 411 - 676
Target Start/End: Original strand, 47291856 - 47292117
Alignment:
Q  411 actaaaacagatgcaaagcaacctaaggctaaa-----taaaacagccgaaaataataacaacaaagaataggggctgacagaattataatatgaaaacc 505  Q
    |||||||||||||||||||| ||||||||||||     ||||||||| || |||||||| ||||||||||||||||||| ||||||||||||| ||| ||    
T  47291856 actaaaacagatgcaaagcagcctaaggctaaattaaataaaacagctgataataataaaaacaaagaataggggctgatagaattataatattaaatcc 47291955  T
Q  506 tatatactagttaatatatcacaataacaaacaggtctttcattataattatatagcacaaaagcccccaactttatttaacagcaatcacgacattaca 605  Q
    || ||||||||||||||||| ||  ||| || ||| |||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||         
T  47291956 tagatactagttaatatatctcacaaac-aataggcctttcattatcattatatagcacacaagcccccaactttatttaacaggaatcacgaca----- 47292049  T
Q  606 attttacaaactacaacaaactataaggtagacatcgcaaaactaggaccactcggtgtaggatgattttg 676  Q
       ||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||| ||||||    
T  47292050 ---ttacaaactacaacaaactataaggtagacatcgcaaaattatgagcactcggtgtaggataattttg 47292117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 23 - 213
Target Start/End: Original strand, 47297703 - 47297891
Alignment:
Q  23 taggagagtcggtatgtgtgggaacaatagtaagaaagtgtccaaaatgtcaaaaagtgtccaatagtaagaaagtgtttttaccnnnnnnnnnn--tag 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||            |||    
T  47297703 taggagagtcggtatgtgtgggaacaatagtaagaaagtgtccaaaatgtcaaaaagtgtccaatagtaag----tgtttttaccaacaaaaaaaaatag 47297798  T
Q  121 taagaaagtgtctctgacgatatatggaaggaatagaaaaaggtcccaaaatgtcaacatgaactaaatcgaaacaattatcaaaacaagtaa 213  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47297799 taagaaagtgtctgtgacgatatatggaaggaatagaaaaaggtcccaaaatgtcaacatgaactaaatcgaaacaattatcaaaacaagtaa 47297891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 212 - 361
Target Start/End: Original strand, 47291648 - 47291790
Alignment:
Q  212 aaaacttgatcacttgaatataaaaaaggaggatttgttatatatatggttcaaacttcaaaggttgtagcatcgttcccttctctcctctctaacagat 311  Q
    |||||||||||| |||||||| |||| ||  ||||||||||||| |||| |||||       || ||||||||| ||||||||| |||||||||||||||    
T  47291648 aaaacttgatcaattgaatatgaaaaggggcgatttgttatatagatggctcaaa-------ggatgtagcatcattcccttctatcctctctaacagat 47291740  T
Q  312 ttgaatagaaccgagccatactaacaaaaacttacttctctaattttgac 361  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  47291741 ttgaatacaaccgtgccatactaacaaaaacttacttctctaattttgac 47291790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 622 - 678
Target Start/End: Complemental strand, 47284150 - 47284094
Alignment:
Q  622 caaactataaggtagacatcgcaaaactaggaccactcggtgtaggatgattttgat 678  Q
    |||||||||||||||| ||  |||||||||||||| ||| |||||| ||||||||||    
T  47284150 caaactataaggtagagatgacaaaactaggaccaatcgttgtaggttgattttgat 47284094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University