View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14996_low_4 (Length: 473)
Name: NF14996_low_4
Description: NF14996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14996_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 20 - 458
Target Start/End: Original strand, 2671167 - 2671606
Alignment:
| Q |
20 |
gctataattcgattattttgaaaatcactcacagatttgaactcacgttctcccgaacgattcgtccttaattggagttcattaactttgttttgcttat |
119 |
Q |
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| T |
2671167 |
gctataattcgattattttgaaaatcactcacagatttgaactcacgttctcccgaacgattcgtccttaattggagttcattaactttgttttgcttat |
2671266 |
T |
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| Q |
120 |
agctactttatgttgatattttgatacaagtaatatacttgtgcagtaaatttatgtttatttgggaagaaggctgacttatgccaaactta-tgcaaaa |
218 |
Q |
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| T |
2671267 |
agctactttatgtggatattttgatacaagtaatatacttgtgcaataaatttatgtttatttgggaagaaggctgacttatgccaaacttaatgcaaaa |
2671366 |
T |
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| Q |
219 |
tgatattttatacttaaaagttaagcttcttcttttcagatgaagctgacacaggatcttctggtggctccaaaaagaatgcaggaatgattgctggaat |
318 |
Q |
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| T |
2671367 |
tgatattttatacttaaaagttaagcttcttcttttcagatgaagctgacacaggatcttctggtggctccaaaaagaatgcaggaatgattgctggaat |
2671466 |
T |
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| Q |
319 |
tacaattactatagttatcctgattttgggagtgatcttattcattttgaggaataaaaggagatggcagagaatacagaaagtgaataatagtcagaga |
418 |
Q |
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| T |
2671467 |
tacaattactatagttatcctgattttgggagtgatcttattcattttgaggaagaaaaggagatggcagagaatacagaaagtgaataatagtcagaga |
2671566 |
T |
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| Q |
419 |
ggtacttgcacctaatgttctcttaaccatgctacctatg |
458 |
Q |
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| T |
2671567 |
ggtacttgcacctaatgttctcttaaccatgctacctatg |
2671606 |
T |
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