View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14996_low_5 (Length: 465)
Name: NF14996_low_5
Description: NF14996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14996_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 1 - 452
Target Start/End: Complemental strand, 45378820 - 45378372
Alignment:
| Q |
1 |
gtatgtacctatgtactttcatgatcatcagatagggattgatgaagcagattaatcgccacatgtcggcaacatgcttgtgttgttaaattttgtgcac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45378820 |
gtatgtacctatgtactttcatgatcatcagatagggattgatgaagcagattaatcgccacatgtcggcaacatgcttgtgttgttaaattttgtgcac |
45378721 |
T |
|
| Q |
101 |
acgtggcttatgctttaggcaaggaaacaaataacctttcataaaaattgacctaatcatgaaacaaactaaataagatgacatattatttattatctgg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
45378720 |
acgtggcttatgctttaggcaaggaaacaaataacctttcataaaaattgacctaatcatgaaacaaactaaataagatgacatattatttatcatctgg |
45378621 |
T |
|
| Q |
201 |
acggtgctaaactaaatatgacacgtccaaggcagaatccaataccaactcttctctttccacgtgtccctcgattcatttcatcacaaacattatttat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
45378620 |
acggtgctaaactaaatatgacacgtccaaggcagaatccaataccaactcttctctttccacgtgtccctcgattcatttcatcagaaacattattt-- |
45378523 |
T |
|
| Q |
301 |
tattaattgtatatgagagagggaccattcctattgtttagaaagaattccacttgcatacgccaaatacctaggtagtttgaacctcaacaaactttac |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
45378522 |
-attaattgtatatgagagagggaccattcctattgtttagaaagaattgcacttgcatacgccaaatacctatgtagtttgaacctgaacaaactttac |
45378424 |
T |
|
| Q |
401 |
tcgtttaaccgttttctcagttatcttcatcttaaatcaaatcgtctctgct |
452 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45378423 |
tcgtttaaccgttttctcagttatcttcatcttaaatcaaatcgtctctgct |
45378372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 33087433 - 33087295
Alignment:
| Q |
1 |
gtatgtacctatgtactttcatgatcatc--agatagggattgatgaagcagattaatcgccacatgtcggcaacatgcttgtgttgttaaattttgtgc |
98 |
Q |
| |
|
|||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
33087433 |
gtatatacctatgtactttcatgatcatataaaatagggattgatgaagcagattaatcgccacatgtcggcaacatgcttgtgctgttccattttgtgc |
33087334 |
T |
|
| Q |
99 |
acacgtggcttatgctttaggcaaggaaacaaataacctt |
138 |
Q |
| |
|
|||||| |||| |||||| ||||||||| ||||||||||| |
|
|
| T |
33087333 |
acacgt-gcttgtgctttgggcaaggaagcaaataacctt |
33087295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University