View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14996_low_6 (Length: 353)

Name: NF14996_low_6
Description: NF14996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14996_low_6
NF14996_low_6
[»] chr2 (4 HSPs)
chr2 (15-330)||(1354332-1354648)
chr2 (15-287)||(1361218-1361490)
chr2 (162-206)||(1357248-1357292)
chr2 (147-205)||(20492147-20492205)
[»] chr4 (3 HSPs)
chr4 (15-291)||(47073216-47073489)
chr4 (143-291)||(29954008-29954156)
chr4 (143-206)||(51370382-51370445)
[»] chr1 (1 HSPs)
chr1 (15-291)||(26970477-26970750)
[»] chr8 (2 HSPs)
chr8 (206-291)||(41190811-41190896)
chr8 (19-116)||(41190707-41190804)
[»] chr6 (1 HSPs)
chr6 (143-287)||(12845968-12846112)
[»] chr3 (1 HSPs)
chr3 (155-291)||(11529985-11530121)


Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 15 - 330
Target Start/End: Original strand, 1354332 - 1354648
Alignment:
Q  15 aaaccattgaaccattcatcaaattggtaagattgcctttaccacacatagagcaactcccaccaggggcagaaaacactatggacattccaataaacat 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  1354332 aaaccattgaaccattcatcaaattggtaagattgcctttaccacacatagagcaactcccaccaggtgcagaaaacactatggacattccaataaacat 1354431  T
Q  115 gaacaaataccttgaactagcctatcaaggtcttcaagatgatgttactgagattctcaaaacatcaaaacctgattgggttttctatgattatggtact 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1354432 gaacaaataccttgaactagcctatcaaggtcttcaagatgatgttactgagattctcaaaacatcaaaacctgattgggttttctatgattatggtact 1354531  T
Q  215 gtttggttagcaccaatagctaaaagcctaaacatagcttctgttcattacagcataacaccagcttggaacatatg-nnnnnnnatcgacctaagaatc 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||| |||    
T  1354532 gtttggttagcaccaatagctaaaagcctaaacatagcttctgttcattacagcataacaccagcttggaacatatgtttttttgatcgacctaaggatc 1354631  T
Q  314 aaatcaaagcaaatttc 330  Q
    |||||||| ||||||||    
T  1354632 aaatcaaaacaaatttc 1354648  T

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Target: chr2; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 15 - 287
Target Start/End: Original strand, 1361218 - 1361490
Alignment:
Q  15 aaaccattgaaccattcatcaaattggtaagattgcctttaccacacatagagcaactcccaccaggggcagaaaacactatggacattccaataaacat 114  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |  ||||||    
T  1361218 aaaccattgaaccattcattaaattggtaagattgcctttaccacacatagagcaactcccaccaggcgcagaaaacactatggacattcaaccaaacat 1361317  T
Q  115 gaacaaataccttgaactagcctatcaaggtcttcaagatgatgttactgagattctcaaaacatcaaaacctgattgggttttctatgattatggtact 214  Q
    ||||   | |||| | | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  | |    
T  1361318 gaaccgtttccttaagcaagcctatgaaggtcttcaagatgatgttactgagattctcaaaacatcaaaacctgattgggttttctatgattttgcaagt 1361417  T
Q  215 gtttggttagcaccaatagctaaaagcctaaacatagcttctgttcattacagcataacaccagcttggaaca 287  Q
    | |||||| |||||||||||||||||||| ||||||||| ||| |||||||| ||||||||||||||||||||    
T  1361418 ggttggttggcaccaatagctaaaagcctcaacatagctgctgctcattacaacataacaccagcttggaaca 1361490  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 1357248 - 1357292
Alignment:
Q  162 ctgagattctcaaaacatcaaaacctgattgggttttctatgatt 206  Q
    ||||||| |||||||| ||||| ||||||||||||||||||||||    
T  1357248 ctgagatactcaaaacttcaaatcctgattgggttttctatgatt 1357292  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 205
Target Start/End: Original strand, 20492147 - 20492205
Alignment:
Q  147 ttcaagatgatgttactgagattctcaaaacatcaaaacctgattgggttttctatgat 205  Q
    |||||||  |||||||||| || || ||||| ||||| |||||||||||||||||||||    
T  20492147 ttcaagaccatgttactgaaatacttaaaacttcaaagcctgattgggttttctatgat 20492205  T

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Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 15 - 291
Target Start/End: Original strand, 47073216 - 47073489
Alignment:
Q  15 aaaccattgaaccattcatcaaattggtaagattgcctttaccacacatagagcaactcccaccaggggcagaaaacactatggacattccaataaacat 114  Q
    ||||||||||| |||| |||||||| ||||| ||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||| |||||||    
T  47073216 aaaccattgaagcatttatcaaattagtaaggttgcctttaccacacgtagagcaattcccaccaggtgcagaaaacactatggacattccactaaacat 47073315  T
Q  115 gaacaaataccttgaactagcctatcaaggtcttcaagatgatgttactgagattctcaaaacatcaaaacctgattgggttttctatgattatggtact 214  Q
    |||||||| |||||||||||| ||||    |||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  47073316 gaacaaattccttgaactagcttatct---tcttaaagatgatattattgagattctcaaaacatcaaaacctgattgggttttctacgattatggtact 47073412  T
Q  215 gtttggttagcaccaatagctaaaagcctaaacatagcttctgttcattacagcataacaccagcttggaacatatg 291  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  47073413 gtttggttagcaccaatagctaaaagcctcaacatagcttctgttcattacagcataacaccagcttgcaacatatg 47073489  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 143 - 291
Target Start/End: Original strand, 29954008 - 29954156
Alignment:
Q  143 ggtcttcaagatgatgttactgagattctcaaaacatcaaaacctgattgggttttctatgattatggtactgtttggttagcaccaatagctaaaagcc 242  Q
    ||||| ||||| |||||||||||||| |||||||| ||||| |||||||||||||| ||||||||||   ||| ||||||| |  ||||||| |||||||    
T  29954008 ggtctccaagacgatgttactgagatactcaaaacttcaaagcctgattgggttttatatgattatgcagctgattggttaccgtcaatagcgaaaagcc 29954107  T
Q  243 taaacatagcttctgttcattacagcataacaccagcttggaacatatg 291  Q
    | |||||  ||| || |||||||| | |    |||||||||||||||||    
T  29954108 tcaacattccttgtgctcattacaacgttgtcccagcttggaacatatg 29954156  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 206
Target Start/End: Complemental strand, 51370445 - 51370382
Alignment:
Q  143 ggtcttcaagatgatgttactgagattctcaaaacatcaaaacctgattgggttttctatgatt 206  Q
    ||||| |||||  |||||||||| || |||||||| ||||| ||||||||||||||||||||||    
T  51370445 ggtctacaagacaatgttactgatatactcaaaacttcaaagcctgattgggttttctatgatt 51370382  T

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Target: chr1 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 15 - 291
Target Start/End: Complemental strand, 26970750 - 26970477
Alignment:
Q  15 aaaccattgaaccattcatcaaattggtaagattgcctttaccacacatagagcaactcccaccaggggcagaaaacactatggacattccaataaacat 114  Q
    ||||||||||| |||| |||||||| ||||| ||||||||||||||| |||||||| |||||||||| || ||||||||||||||||||||| |||||||    
T  26970750 aaaccattgaagcatttatcaaattagtaaggttgcctttaccacacgtagagcaattcccaccaggtgctgaaaacactatggacattccactaaacat 26970651  T
Q  115 gaacaaataccttgaactagcctatcaaggtcttcaagatgatgttactgagattctcaaaacatcaaaacctgattgggttttctatgattatggtact 214  Q
    |||||||| |||||||||||| ||||    |||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  26970650 gaacaaattccttgaactagcttatct---tcttaaagatgatattattgagattctcaaaacatcaaaacctgattgggttttctacgattatggtact 26970554  T
Q  215 gtttggttagcaccaatagctaaaagcctaaacatagcttctgttcattacagcataacaccagcttggaacatatg 291  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  26970553 gtttggttagcaccaatagctaaaagcctcaacatagcttctgttcattacagcataacaccagcttgcaacatatg 26970477  T

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Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 206 - 291
Target Start/End: Original strand, 41190811 - 41190896
Alignment:
Q  206 tatggtactgtttggttagcaccaatagctaaaagcctaaacatagcttctgttcattacagcataacaccagcttggaacatatg 291  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  41190811 tatggtactgtttggttagcaccaatagctaaaagcctcaacatagcttctgttcattacagcataacaccagcttggaacatatg 41190896  T

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Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 116
Target Start/End: Original strand, 41190707 - 41190804
Alignment:
Q  19 cattgaaccattcatcaaattggtaagattgcctttaccacacatagagcaactcccaccaggggcagaaaacactatggacattccaataaacatga 116  Q
    |||| ||||||| |||||||| ||||| || |||||||||||| |||||||| |||||||||| |||||||||||||||||||||||| |||||||||    
T  41190707 cattcaaccatttatcaaattagtaaggttacctttaccacacgtagagcaattcccaccaggtgcagaaaacactatggacattccagtaaacatga 41190804  T

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Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 143 - 287
Target Start/End: Original strand, 12845968 - 12846112
Alignment:
Q  143 ggtcttcaagatgatgttactgagattctcaaaacatcaaaacctgattgggttttctatgattatggtactgtttggttagcaccaatagctaaaagcc 242  Q
    ||||| |||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||| || ||| |  |||||| |  ||||||| |||||      
T  12845968 ggtctccaagatgatgttactgagatactcaaaacatcaaaccctgactgggttttctatgattttgctaccgaatggttaccgtcaatagccaaaagtt 12846067  T
Q  243 taaacatagcttctgttcattacagcataacaccagcttggaaca 287  Q
    | |||||  ||| || |||||| |  |||| ||||||||||||||    
T  12846068 tgaacatcccttgtgctcattataatataataccagcttggaaca 12846112  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 155 - 291
Target Start/End: Original strand, 11529985 - 11530121
Alignment:
Q  155 gatgttactgagattctcaaaacatcaaaacctgattgggttttctatgattatggtactgtttggttagcaccaatagctaaaagcctaaacatagctt 254  Q
    |||||||||||||| ||||||||||||||  ||||||||||||||||||||| ||   ||| ||||||| |  | ||||| |||||||| || ||  |||    
T  11529985 gatgttactgagatactcaaaacatcaaagtctgattgggttttctatgattgtgtagctgattggttaccgtcgatagccaaaagcctgaatattcctt 11530084  T
Q  255 ctgttcattacagcataacaccagcttggaacatatg 291  Q
     ||  |||||||||||    |||||||||||||||||    
T  11530085 gtgcccattacagcattgttccagcttggaacatatg 11530121  T

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