View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14996_low_8 (Length: 272)
Name: NF14996_low_8
Description: NF14996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14996_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 84; Significance: 6e-40; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 29 - 177
Target Start/End: Original strand, 11841895 - 11842045
Alignment:
| Q |
29 |
cctaaagaagtaaaagaaaga--taagtacttgatgtgtgaggacagcaataactttatcaccagctttaaaatccttgacttgtggtccaacatctact |
126 |
Q |
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| T |
11841895 |
cctaaggaagtgaaagaaagagataagtacttgatgtgtgagtttagcaataactttgtcgccagatttgaaatccttgacttgtggtccaacctctacc |
11841994 |
T |
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| Q |
127 |
acctctcctgctacatcagtgcctgaatcaaagtaccaagatcaaaggaat |
177 |
Q |
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| T |
11841995 |
acctctccagctacatcagtgcctgaatcaaagtcccaagagcaaaggaat |
11842045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 72 - 172
Target Start/End: Original strand, 11802045 - 11802145
Alignment:
| Q |
72 |
agcaataactttatcaccagctttaaaatccttgacttgtggtccaacatctactacctctcctgctacatcagtgcctgaatcaaagtaccaagatcaa |
171 |
Q |
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||||||||||||||| ||| |||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||| | |||||| ||| |
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| T |
11802045 |
agcaataactttatctccaactttaaaatccttgacttgttctccaatctctacaacctctcctgctacatcagtgcctgaatcaaattcccaagagcaa |
11802144 |
T |
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| Q |
172 |
a |
172 |
Q |
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| T |
11802145 |
a |
11802145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 75 - 177
Target Start/End: Original strand, 11856335 - 11856437
Alignment:
| Q |
75 |
aataactttatcaccagctttaaaatccttgacttgtggtccaacatctactacctctcctgctacatcagtgcctgaatcaaagtaccaagatcaaagg |
174 |
Q |
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| T |
11856335 |
aataactttgtctccaactttaaaatcgttgacttgcggtccaacctctacaacctctcctgatacatcagtgcctgaatcaaagtcccaagagcaaaag |
11856434 |
T |
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| Q |
175 |
aat |
177 |
Q |
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||| |
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| T |
11856435 |
aat |
11856437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 72 - 160
Target Start/End: Original strand, 11431212 - 11431300
Alignment:
| Q |
72 |
agcaataactttatcaccagctttaaaatccttgacttgtggtccaacatctactacctctcctgctacatcagtgcctgaatcaaagt |
160 |
Q |
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| T |
11431212 |
agcaataactttgtctccaactttgaaatctttaacttgtgatccaaaatctactacctctcctgctacatcggtgcctgaatcaaagt |
11431300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 72 - 160
Target Start/End: Complemental strand, 11564254 - 11564166
Alignment:
| Q |
72 |
agcaataactttatcaccagctttaaaatccttgacttgtggtccaacatctactacctctcctgctacatcagtgcctgaatcaaagt |
160 |
Q |
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| T |
11564254 |
agcaataactttgtctccaactttgaaatctttaacttgtgatccaaaatctactacctctcctgctacatcggtgcctgaatcaaagt |
11564166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 101 - 157
Target Start/End: Original strand, 11808050 - 11808106
Alignment:
| Q |
101 |
ccttgacttgtggtccaacatctactacctctcctgctacatcagtgcctgaatcaa |
157 |
Q |
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| T |
11808050 |
ccttgacttgtggtccaacttctactacctctcctgctacatcagtgcctgaatcaa |
11808106 |
T |
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