View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14997_high_2 (Length: 602)

Name: NF14997_high_2
Description: NF14997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14997_high_2
NF14997_high_2
[»] chr5 (2 HSPs)
chr5 (18-539)||(43537648-43538169)
chr5 (451-538)||(322437-322524)
[»] chr1 (2 HSPs)
chr1 (455-538)||(26128626-26128708)
chr1 (372-431)||(45301889-45301948)
[»] chr8 (6 HSPs)
chr8 (463-531)||(16918045-16918113)
chr8 (467-539)||(24288904-24288977)
chr8 (475-539)||(10080825-10080889)
chr8 (470-518)||(7060638-7060686)
chr8 (481-515)||(14224710-14224744)
chr8 (456-517)||(45189195-45189256)
[»] chr3 (4 HSPs)
chr3 (451-530)||(4194816-4194895)
chr3 (372-422)||(13805989-13806039)
chr3 (466-517)||(24882103-24882154)
chr3 (454-517)||(19327298-19327362)
[»] chr7 (2 HSPs)
chr7 (451-509)||(28787622-28787680)
chr7 (454-530)||(41068615-41068690)
[»] chr2 (1 HSPs)
chr2 (456-504)||(9098506-9098554)
[»] chr4 (2 HSPs)
chr4 (463-539)||(17553053-17553129)
chr4 (454-518)||(33583092-33583156)


Alignment Details
Target: chr5 (Bit Score: 514; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 18 - 539
Target Start/End: Complemental strand, 43538169 - 43537648
Alignment:
Q  18 cacaaccaaccacagaactaaatggcatggttaaacttgactagttaaaggcagataatagaaatttatcaaacggaagagccttcctgccctcctccta 117  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43538169 cacaaccaaccacagaactaaatggcatggttaaacttgacttgttaaaggcagataatagaaatttatcaaacggaagagccttcctgccctcctccta 43538070  T
Q  118 acttggaacatcagctgagggactgtcttgtggccaaagcactgcattcaacaacaaaaagtaattgcgttgagtcataccatacaaacaaaaaagcatc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43538069 acttggaacatcagctgagggactgtcttgtggccaaagcactgcattcaacaacaaaaagtaattgcgttgagtcataccatacaaacaaaaaagcatc 43537970  T
Q  218 gaagtgaacatgataagaccctttataactttaaagagcttgaaattatgagcgaccctccactcttcttacaccattctttcccacataaagttgcttc 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43537969 gaagtgaacatgataagaccctttataactttaaagagcttgaaattatgagcgaccctccactcttcttacaccattctttcccacataaagttgcttc 43537870  T
Q  318 gaatttcatgattagcttcaactactatttccacccacctcatctaatgataccgtttactttctaaaaacatttgcaattttcattttctaaaatatct 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  43537869 gaatttcatgattagcttcaactactatttccacccacctcatctaatgataccatttactttctaaaaacatttgcaattttcattttctaaaatatct 43537770  T
Q  418 gttcattttcaatttaaattgctaattatgagttagtgaacaatagtgatagagagaagatggaagggaagctaggaataatgcatttttagaaacaatg 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43537769 gttcattttcaatttaaattgctaattatgagttagtgaacaatagtgatagagagaagatggaagggaagctaggaataatgcatttttagaaacaatg 43537670  T
Q  518 agaacactgttttgccattttc 539  Q
    ||||||||||||||||||||||    
T  43537669 agaacactgttttgccattttc 43537648  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 451 - 538
Target Start/End: Original strand, 322437 - 322524
Alignment:
Q  451 tagtgaacaatagtgatagagagaagatggaagggaagctaggaataatgcatttttagaaacaatgagaacactgttttgccatttt 538  Q
    |||| |||||| || ||||||| || || ||||  ||||||| || ||||||||||||||||||||||  ||| ||||||| ||||||    
T  322437 tagtaaacaattgttatagagaaaatattgaagacaagctagaaagaatgcatttttagaaacaatgaacacaatgttttggcatttt 322524  T

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Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 455 - 538
Target Start/End: Complemental strand, 26128708 - 26128626
Alignment:
Q  455 gaacaatagtgatagagagaagatggaagggaagctaggaataatgcatttttagaaacaatgagaacactgttttgccatttt 538  Q
    ||||||| |||||||||| ||| ||||||| ||||||| || |||||||||||||||||||||| |||| ||||||||||||||    
T  26128708 gaacaattgtgatagagaaaaggtggaaggaaagctagaaagaatgcatttttagaaacaatga-aacaatgttttgccatttt 26128626  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 431
Target Start/End: Complemental strand, 45301948 - 45301889
Alignment:
Q  372 gtttactttctaaaaacatttgcaattttcattttctaaaatatctgttcattttcaatt 431  Q
    ||||||||||||||||||||| ||  |||||||||| ||||| | |||||||||| ||||    
T  45301948 gtttactttctaaaaacattttcagctttcattttccaaaatttatgttcattttaaatt 45301889  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 463 - 531
Target Start/End: Complemental strand, 16918113 - 16918045
Alignment:
Q  463 gtgatagagagaagatggaagggaagctaggaataatgcatttttagaaacaatgagaacactgttttg 531  Q
    |||||||||||||||| ||||| ||| |||||| |||||||||||| ||||||||| |||| |||||||    
T  16918113 gtgatagagagaagatagaaggaaagttaggaagaatgcatttttaaaaacaatgaaaacagtgttttg 16918045  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 467 - 539
Target Start/End: Complemental strand, 24288977 - 24288904
Alignment:
Q  467 tagagagaagat-ggaagggaagctaggaataatgcatttttagaaacaatgagaacactgttttgccattttc 539  Q
    |||||||||||| ||||||||||||||||| | |||| ||||||||||||||| | || ||||||| |||||||    
T  24288977 tagagagaagattggaagggaagctaggaagagtgcaattttagaaacaatgatatcagtgttttggcattttc 24288904  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 475 - 539
Target Start/End: Original strand, 10080825 - 10080889
Alignment:
Q  475 agatggaagggaagctaggaataatgcatttttagaaacaatgagaacactgttttgccattttc 539  Q
    |||||||||  ||||||| |||| ||||||| |||||||||||| |||| |||||||||||||||    
T  10080825 agatggaagacaagctagaaatagtgcatttctagaaacaatgataacattgttttgccattttc 10080889  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 470 - 518
Target Start/End: Complemental strand, 7060686 - 7060638
Alignment:
Q  470 agagaagatggaagggaagctaggaataatgcatttttagaaacaatga 518  Q
    |||||||||| ||| |||| ||||||||||||| |||||||||||||||    
T  7060686 agagaagatgaaagagaagttaggaataatgcaattttagaaacaatga 7060638  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 481 - 515
Target Start/End: Complemental strand, 14224744 - 14224710
Alignment:
Q  481 aagggaagctaggaataatgcatttttagaaacaa 515  Q
    |||| ||||||||||||||||||||||||||||||    
T  14224744 aaggcaagctaggaataatgcatttttagaaacaa 14224710  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 456 - 517
Target Start/End: Complemental strand, 45189256 - 45189195
Alignment:
Q  456 aacaatagtgatagagagaagatggaagggaagctaggaataatgcatttttagaaacaatg 517  Q
    |||||| ||||||||||||| ||| |||  ||| |||||| ||||||||||||| |||||||    
T  45189256 aacaattgtgatagagagaatatgaaagaaaagataggaagaatgcatttttaggaacaatg 45189195  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 451 - 530
Target Start/End: Original strand, 4194816 - 4194895
Alignment:
Q  451 tagtgaacaatagtgatagagagaagatggaagggaagctaggaataatgcatttttagaaacaatgagaacactgtttt 530  Q
    ||||||||||| |||||||||||||||| ||||| ||  |||||| | |||||||| |||||||| || |||| ||||||    
T  4194816 tagtgaacaattgtgatagagagaagatagaaggtaaaataggaagattgcattttcagaaacaacgaaaacaatgtttt 4194895  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 372 - 422
Target Start/End: Original strand, 13805989 - 13806039
Alignment:
Q  372 gtttactttctaaaaacatttgcaattttcattttctaaaatatctgttca 422  Q
    ||||||||||||||| ||||| |||||||||||||||||||| | ||||||    
T  13805989 gtttactttctaaaagcattttcaattttcattttctaaaatttatgttca 13806039  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 466 - 517
Target Start/End: Original strand, 24882103 - 24882154
Alignment:
Q  466 atagagagaagatggaagggaagctaggaataatgcatttttagaaacaatg 517  Q
    ||||| |||| ||||||||||||||||||||| | |||||| ||||||||||    
T  24882103 atagaaagaaaatggaagggaagctaggaatagtacattttcagaaacaatg 24882154  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 454 - 517
Target Start/End: Complemental strand, 19327362 - 19327298
Alignment:
Q  454 tgaacaatagtgatagagagaagatggaagg-gaagctaggaataatgcatttttagaaacaatg 517  Q
    |||| ||| |||||||||| ||||||||||| ||||||||||| |||||||| |  |||||||||    
T  19327362 tgaataattgtgatagagaaaagatggaaggcgaagctaggaagaatgcattgtccgaaacaatg 19327298  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 451 - 509
Target Start/End: Original strand, 28787622 - 28787680
Alignment:
Q  451 tagtgaacaatagtgatagagagaagatggaagggaagctaggaataatgcatttttag 509  Q
    ||||||||||| |||||||||||||||||||||||||  || ||| |||| ||||||||    
T  28787622 tagtgaacaattgtgatagagagaagatggaagggaatatatgaagaatgtatttttag 28787680  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 454 - 530
Target Start/End: Original strand, 41068615 - 41068690
Alignment:
Q  454 tgaacaatagtgatagagagaagatggaagggaagctaggaataatgcatttttagaaacaatgagaacactgtttt 530  Q
    |||||||  |||||||||| ||||||||||| ||| || |||||||| |||||||| ||||||||| ||| ||||||    
T  41068615 tgaacaactgtgatagagaaaagatggaaggcaagataagaataatgtatttttag-aacaatgagtacagtgtttt 41068690  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 456 - 504
Target Start/End: Original strand, 9098506 - 9098554
Alignment:
Q  456 aacaatagtgatagagagaagatggaagggaagctaggaataatgcatt 504  Q
    |||||| |||||||||||||||||||||| |||||||||| | ||||||    
T  9098506 aacaattgtgatagagagaagatggaaggcaagctaggaagactgcatt 9098554  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 463 - 539
Target Start/End: Complemental strand, 17553129 - 17553053
Alignment:
Q  463 gtgatagagagaagatggaagggaagctaggaataatgcatttttagaaacaatgagaacactgttttgccattttc 539  Q
    ||||||||||| |||||||||   || |||  | |||||||||| ||||||||||| |||| ||||||| |||||||    
T  17553129 gtgatagagagtagatggaagactagttagtgagaatgcattttcagaaacaatgaaaacaatgttttgacattttc 17553053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 454 - 518
Target Start/End: Original strand, 33583092 - 33583156
Alignment:
Q  454 tgaacaatagtgatagagagaagatggaagggaagctaggaataatgcatttttagaaacaatga 518  Q
    |||||||| |||||||||||||||| |||   ||| |||||| |||  |||||||||||||||||    
T  33583092 tgaacaattgtgatagagagaagattgaacaaaagttaggaacaatatatttttagaaacaatga 33583156  T

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