View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14997_high_3 (Length: 297)
Name: NF14997_high_3
Description: NF14997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14997_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 2 - 279
Target Start/End: Complemental strand, 44010113 - 44009829
Alignment:
| Q |
2 |
catcatacctaaacataacctaatacaaataatgttgcaaattttggtagttagtatcaattgattactttttcttaattggtagtgggtaatttttttc |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44010113 |
catcatacctaaacataacctaatacaaataatgttgcaaattttggtagttagtatcaattgattactttttcttaattggtagtgggtaatttttttc |
44010014 |
T |
|
| Q |
102 |
ttcataattacnnnnnnnnng-------ctcaaagcatcctacgactagaaggtagagactaatcttttcagattcaaagatctattaaaggagttaaca |
194 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
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| T |
44010013 |
ttcataattactttttttttttttttttctcaaagcatcctacgactagaaggtagagactattcttttcaggttcaaagatctattaaaggagttaaca |
44009914 |
T |
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| Q |
195 |
tctctcggcgagtcttcgaatttctgaaacttcgcataatacttattaaataaattctattggattacattcttttgatagattt |
279 |
Q |
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|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44009913 |
tctctcagcgagtcttcgaacttctgaaacttcgcataatacttattaaataaattctattggattacattcttttgatagattt |
44009829 |
T |
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