View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14997_high_5 (Length: 261)
Name: NF14997_high_5
Description: NF14997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14997_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 29519593 - 29519341
Alignment:
| Q |
1 |
gtaataaaattaagattatgtcattttcttggttaactaaatgatttactcagatgcattatttgaacttattcgcttaattctcttaaacgaaatcaag |
100 |
Q |
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| T |
29519593 |
gtaataaaattaagattatgtcattttcttggttaactaaatgatttactcagatgcattatttgaacttattcacttaattctcttaaacgaaatcatg |
29519494 |
T |
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| Q |
101 |
gctcatagatttacttgttgattgcaaagcttgtttatcgtcgtccttatctagtaatcattgtcaaaaccaagtagtccttattcacttagttcctatt |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29519493 |
gctcatagatttacttgttgattgtaaagcttgtttatcgtcgtccttatctagtaatcattgtcaaaaccaagtagtccttattcacttagttcctatt |
29519394 |
T |
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| Q |
201 |
gtatgcctattataggattttattttatgatttatgcattttgagatctctgc |
253 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29519393 |
gtatgcctattataggattttattttatgatttatgcattttgagatctctgc |
29519341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 5332463 - 5332715
Alignment:
| Q |
1 |
gtaataaaattaagattatgtcattttcttggttaactaaatgatttactcagatgcattatttgaacttattcgcttaattctcttaaacgaaatcaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
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| T |
5332463 |
gtaataaaattaagattatgtcattttcttggttaactaaatgatttactcagatgcattatttgaacttattcacttaattctcttaaacgaaatcatg |
5332562 |
T |
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| Q |
101 |
gctcatagatttacttgttgattgcaaagcttgtttatcgtcgtccttatctagtaatcattgtcaaaaccaagtagtccttattcacttagttcctatt |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5332563 |
gctcatagatttacttgttgattacaaagcttgtttatcgccgtccttatctagtaatcattgtcaaaaccaagtagtccttattcacttagttcctatt |
5332662 |
T |
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| Q |
201 |
gtatgcctattataggattttattttatgatttatgcattttgagatctctgc |
253 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5332663 |
gtatgcctattataggattttattttatgatttatgcattttgagatctctgc |
5332715 |
T |
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